Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0296
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical pr... 31 0.94
U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical pr... 31 0.94
L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy c... 29 2.9
L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated p... 29 2.9
AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy... 29 2.9
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 27 8.7
AF099914-7|AAC68762.1| 220|Caenorhabditis elegans Hypothetical ... 27 8.7
AF099914-5|AAC68757.2| 218|Caenorhabditis elegans Hypothetical ... 27 8.7
>U61955-7|AAV58862.1| 456|Caenorhabditis elegans Hypothetical
protein M03D4.4b protein.
Length = 456
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 181 TSSTSCTSGCRQCCRRRRNAG*VRSLYQQLDDKDEEINQHSQL 309
T+S S TS C+ C + V L QQ+ KDEE + Q+
Sbjct: 380 TASESSTSSCKDCTNSWQR---VHDLEQQMVKKDEEFENYKQM 419
>U61955-6|AAC24408.2| 505|Caenorhabditis elegans Hypothetical
protein M03D4.4a protein.
Length = 505
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 181 TSSTSCTSGCRQCCRRRRNAG*VRSLYQQLDDKDEEINQHSQL 309
T+S S TS C+ C + V L QQ+ KDEE + Q+
Sbjct: 429 TASESSTSSCKDCTNSWQR---VHDLEQQMVKKDEEFENYKQM 468
>L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy
chain protein.
Length = 815
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 256 LYQQLDDKDEEINQHSQ 306
LYQQLD+KD+EI + SQ
Sbjct: 438 LYQQLDEKDDEIQKVSQ 454
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 77 ELNRWRSGETVRLEEQVNLQE 139
EL+RWR+GE+V E VNL +
Sbjct: 368 ELSRWRAGESVSEVEWVNLSD 388
>L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated
protein 116 protein.
Length = 815
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 256 LYQQLDDKDEEINQHSQ 306
LYQQLD+KD+EI + SQ
Sbjct: 438 LYQQLDEKDDEIQKVSQ 454
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 77 ELNRWRSGETVRLEEQVNLQE 139
EL+RWR+GE+V E VNL +
Sbjct: 368 ELSRWRAGESVSEVEWVNLSD 388
>AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy
chain protein.
Length = 815
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 256 LYQQLDDKDEEINQHSQ 306
LYQQLD+KD+EI + SQ
Sbjct: 438 LYQQLDEKDDEIQKVSQ 454
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 77 ELNRWRSGETVRLEEQVNLQE 139
EL+RWR+GE+V E VNL +
Sbjct: 368 ELSRWRAGESVSEVEWVNLSD 388
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 162 VTGVTAS-ISCRFTCSSSLTVSPERQRFSSASSFSTYVLGIKKISLVMR 19
VTG + S +S CS + S E + ASS + + K++LV+R
Sbjct: 295 VTGASRSTLSKLLFCSENSESSSENNNYHQASSVEPFETTVAKLNLVLR 343
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -2
Query: 577 KMDAYQSDLNTGALLHT---NAQGVLPLGHDDFKLFYSK 470
K+ YQ DLN L GV+ H F +FYSK
Sbjct: 45 KVKLYQIDLNDRKSLENALRGCDGVIHCAHSPFPIFYSK 83
>AF099914-7|AAC68762.1| 220|Caenorhabditis elegans Hypothetical
protein C40A11.7 protein.
Length = 220
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 26 TNDIFFIPKT*VEKLEAELNRWRSGETVRLEEQVNLQEIE 145
T+D +FI ++ + E LN RSG TV + + LQE++
Sbjct: 45 TSDCYFIDRS-PKYFETVLNYMRSGVTVLPDSEKELQELK 83
>AF099914-5|AAC68757.2| 218|Caenorhabditis elegans Hypothetical
protein C40A11.6 protein.
Length = 218
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 26 TNDIFFIPKT*VEKLEAELNRWRSGETVRLEEQVNLQEIE 145
T+D +FI ++ + E LN RSG TV + + LQE++
Sbjct: 45 TSDCYFIDRS-PKYFETVLNYMRSGVTVLPDSEKELQELK 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,246,767
Number of Sequences: 27780
Number of extensions: 220830
Number of successful extensions: 499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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