Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 393 TSLLTFRGRIRIDTRSIATNYTTKCFLE 476
           T  L     I +    I+ NYTT C +E
Sbjct: 167 TDPLVVNPEIELPQLDISNNYTTDCTIE 194


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 419 NQN*YKINCYQLYYQM 466
           N N Y  NC +LYY +
Sbjct: 101 NNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 419 NQN*YKINCYQLYYQM 466
           N N Y  NC +LYY +
Sbjct: 101 NNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 419 NQN*YKINCYQLYYQM 466
           N N Y  NC +LYY +
Sbjct: 101 NNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 419 NQN*YKINCYQLYYQM 466
           N N Y  NC +LYY +
Sbjct: 101 NNNNYNNNCKKLYYNI 116


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/32 (18%), Positives = 20/32 (62%)
 Frame = -3

Query: 600 YFIHISLKKWMPIRAI*TPVHCYIRMHRVSYL 505
           + +++ +++W P+R+  +P+    ++  + YL
Sbjct: 119 HLLNLEVERWRPLRSRLSPIFTSGKLKEMFYL 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,638
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)