Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr...    31   0.88 
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit...    29   2.7  
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit...    29   3.5  
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ...    28   6.2  
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ...    28   6.2  

>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
           protein
          Length = 253

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 395 FITHVQRENQN*YKINCYQLYYQMFFRIKKFE 490
           +  H+Q EN + YKINC +L  +M +  +K E
Sbjct: 218 YTLHLQVENMDDYKINCEELSERMLYLYEKCE 249


>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 601 VFHSYFIEKMDAYQSDLNTGALLHTNAQG----VLPLGHDDFKLFYSKKH 464
           V H YF+E  D +    NT   +++   G    ++  GHDD+    +K++
Sbjct: 188 VHHKYFVENPDFHNETYNTKNGIYSEGCGLNNVMMSWGHDDYMYLVAKEN 237


>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 314

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 601 VFHSYFIEKMDAYQSDLNTGALLHTNAQG----VLPLGHDDFKLFYSKKH 464
           V H YF+E  D      NT A +++   G    ++  GHDD+    +K++
Sbjct: 185 VHHKYFMENPDFNNPKYNTKAGIYSEGCGLENVLMSWGHDDYMYLVAKEN 234


>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 509

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 496 DDFKLFYSKKHLVV*LVAIDLVSILILPLNVSN 398
           DD    Y  K +VV  ++I ++SIL+LP +V+N
Sbjct: 34  DDANQAYFPKFVVVFGLSIAMISILMLPADVAN 66


>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 526

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 496 DDFKLFYSKKHLVV*LVAIDLVSILILPLNVSN 398
           DD    Y  K +VV  ++I ++SIL+LP +V+N
Sbjct: 34  DDANQAYFPKFVVVFGLSIAMISILMLPADVAN 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,252
Number of Sequences: 28952
Number of extensions: 192939
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)