Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0294
         (580 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           27   0.087
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   3.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   3.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 0.087
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = +3

Query: 237 DEQKLQPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNF----NGD 404
           + ++ +P  D +EV       N GN    G PK+      + N NQP   NN     NG+
Sbjct: 328 EPKRPRPNIDRHEVTRPAAPANRGN----GFPKRSSDEQQWRN-NQPSTSNNRWHNNNGN 382

Query: 405 KSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNA 512
            S  + +  N ND    +    ++  G  + N++N+
Sbjct: 383 NSNNHWRKNNPND---NRNNTSSRAQGETSRNSKNS 415


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 88  LSTIKMQYNGFHN 126
           L TI M Y+GFHN
Sbjct: 485 LYTIHMGYHGFHN 497


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 228 T*YDEQKLQPRNDFNEVKNDYNTKNDGNQNDFGGP 332
           T + EQ +    DF  +     + ND N+ND   P
Sbjct: 242 TKFTEQSVTSTFDFLSLHPAETSMNDANRNDCAKP 276


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 228 T*YDEQKLQPRNDFNEVKNDYNTKNDGNQNDFGGP 332
           T + EQ +    DF  +     + ND N+ND   P
Sbjct: 242 TKFTEQSVTSTFDFLSLHPAETSMNDANRNDCAKP 276


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 252 QPRNDFNEVKNDYNTKNDGNQNDFGGPKQ 338
           +PRN+   +KN  ++      N+  GP++
Sbjct: 406 RPRNNSILIKNFNDSPESNRSNEIDGPEK 434


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 234 IRSWSKVFRSSKIRKTFNVWNF 169
           +R+  K+  + +IR  F +WNF
Sbjct: 401 VRTLYKLPPNYEIRHKFKLWNF 422


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,470
Number of Sequences: 336
Number of extensions: 3454
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)