Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0294
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    40   3e-04
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    32   0.053
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   0.65 
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    29   0.65 
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    29   0.65 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   2.0  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.6  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   6.1  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    25   6.1  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   6.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   6.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   8.0  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   8.0  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   8.0  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +3

Query: 261 NDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN 440
           N+ N    +YN  N GN N     +Q +  ++   G      N+ +G+ +  N    N  
Sbjct: 565 NNNNSNSGNYNNNNSGNNN-----QQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQ 619

Query: 441 DFGGPKQQNY-NKNYGPKTYNNQNAMGM--SSLNLFL 542
           ++G    QNY N N   +  N+Q   G+   ++N+FL
Sbjct: 620 NYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQAVNMFL 656



 Score = 29.1 bits (62), Expect = 0.49
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +3

Query: 291 NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNY 470
           ++ N+ N ++          N  NN +   K ++ +G  S      GN N+       NY
Sbjct: 515 SSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSNSGNY 574

Query: 471 NKNYGPKTYNNQNAMGMSSL 530
           N N      N Q+    SSL
Sbjct: 575 NNNNSGNN-NQQHQQSSSSL 593



 Score = 25.4 bits (53), Expect = 6.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
 Frame = +3

Query: 351 NNFNNGNQPPKKNNFNGDKSPGNMQ-----YGNKNDF-----GGPKQQNYNKNYGPK--T 494
           NN NN N     NN +G+ +  + Q      G  + F     G   +QNYN N       
Sbjct: 564 NNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGN 623

Query: 495 YNNQN 509
            NNQN
Sbjct: 624 NNNQN 628


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 261 NDFNEVKNDYNTKNDG-NQNDFGGPKQFRPRNNFNNGNQPP--KKNNFNGDKSPGN 419
           N ++  ++ +N  N G N+N+ G P+    R N+NN    P    N  + ++SP N
Sbjct: 315 NKYSHYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQSPRN 370



 Score = 28.7 bits (61), Expect = 0.65
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 291 NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNY 470
           NT +  N+ + G   + R  + + N +    K +        N    N+N+ G P+ +N 
Sbjct: 285 NTSSRSNRQNHGNFSEKRHYDRYGNSHPSYNKYSHYQHGFNYNNSGNNRNESGHPRFRNS 344

Query: 471 NKNYGPKTYNNQNA 512
            +N     YNNQ A
Sbjct: 345 RRN-----YNNQGA 353


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = +3

Query: 342 RPRNNFNNGNQPPKK-----NNFNGDKSPGNMQYGN 434
           R     ++GNQPP++     N F+    P NMQ GN
Sbjct: 569 RNTQTLSSGNQPPQQSGPNPNEFSMSMDPANMQQGN 604


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 234 YDEQKLQPRNDF-NEVKNDYNTKNDGNQNDFGGP-KQFRPRNNFNNGNQPPKKNNFNGDK 407
           Y  +KL+ RN + +E+   Y+   D     +G   K+F+P+N        PKKNN    +
Sbjct: 167 YSLRKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKEFLPKKNNTTNSR 226

Query: 408 S 410
           +
Sbjct: 227 N 227


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
 Frame = +3

Query: 234 YDEQ--KLQPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGD- 404
           +DE   KL  + ++  + +   + +    N F  P Q  P N+F+N N     N    D 
Sbjct: 147 FDEMRNKLVGKTNYKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQQANDI 206

Query: 405 -KSPGNMQYGNKNDFGGPKQQNYNKNY---GPKTYNNQNAMGMSS 527
             +P    + ++ +   P  QN + N         NN ++ G SS
Sbjct: 207 FGAPTTSAFTSQLN-ASPFSQNTSSNSFTGSNPVQNNPSSFGSSS 250


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 387 NNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNAMGMSSLNLFLGN 548
           N++N D +  N  YG+ N++G     N   NYG  +Y   N  G +  +   GN
Sbjct: 46  NSYN-DNNNSNSTYGSSNNYGNYGSSN---NYG--SYGASNTYGSNGSSNNYGN 93



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +3

Query: 351 NNFNNGNQP-PKKNNFNGDKSPGNM-QYGNKNDFGGPKQQNYNKNYGPKTYN 500
           N+ NN N      NN+    S  N   YG  N +G     N   NYG    N
Sbjct: 49  NDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSN 100


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 500 VVCFRPIILVIILLFRTAKIIF 435
           V CF PI+L IIL   T   IF
Sbjct: 22  VSCFNPILLKIILFLNTIVCIF 43


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 54  STVKPFEANKSIVHHQNAVQRVSQSTSDASARPQ*TIR*NSI 179
           S + PF  +KS  HH ++    S S S  S  P  T+  N +
Sbjct: 534 SPISPFSKSKSHNHHPSSQVEKSTSNSKGSMLPLDTLYNNKL 575


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 267 FNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKN 389
           F E  N Y+T NDGN ++     +    +  +N  +P   N
Sbjct: 818 FLENANPYSTNNDGNPSNNTSDVEVNETSMNDNSEEPISSN 858


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 276 VKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 371
           VKND     D N  +F    QF+ RN    G+
Sbjct: 9   VKNDKENFEDPNATNFESVSQFKIRNVIGKGS 40


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +3

Query: 381 KKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNAMG 518
           + N ++G+ +     Y ++  +GG  + NY++  G   +N+  + G
Sbjct: 4   RDNEYSGNYNGKEDGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYG 49


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
 Frame = +3

Query: 249 LQPRNDFNEVKNDYNTKNDGNQNDFG---GP--KQFRPRNNFNNGNQP---PKKNNFNGD 404
           L   NDF   +ND +   +   ++F    GP  K+   R + + GN+    P+ + FN  
Sbjct: 477 LDMSNDFRMNENDPSIVGNLAASNFPTGMGPPRKRVTSRMSEHTGNRVVSFPRGSAFNPR 536

Query: 405 KSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQNAM 515
            +  N+  GN+         NYN+ Y   T NN   +
Sbjct: 537 VTRFNV--GNEQFSNNIDNNNYNQPYANATMNNSRRL 571


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 136 MPQPDRNEQFGKIPYIKGLPDFGGPKNFGPRPNMMNKNFS 255
           MPQ + N     +  +K    F  P    P P + N NFS
Sbjct: 363 MPQVNVNPSNQDLASVKQPSGFSPPSAVAPPPGLGNHNFS 402


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 577 RMLNRVWTVRLPRNKFRLLIPIAFW 503
           R+  RV  V+  RNK RL++   FW
Sbjct: 461 RLAVRVKVVQEKRNKDRLIVTFRFW 485


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 234 YDEQKLQPRNDFNEVKNDYNTKND 305
           Y E +  P N FN++   YNT  D
Sbjct: 165 YKEFQKHPDNPFNKMNVSYNTSQD 188


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 6   DHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDASAR 149
           D TLK     +KR+ N  + P ++N+S      A+++  QST++   +
Sbjct: 64  DVTLKNIAKKNKRERNDKLIPQQSNES-----EAIEKPVQSTTEVELK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,905
Number of Sequences: 5004
Number of extensions: 54636
Number of successful extensions: 212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)