Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0294
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 35 0.041
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 33 0.16
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 32 0.38
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969... 32 0.38
07_03_1075 + 23773279-23773516,23773527-23773723 31 0.66
01_06_1793 - 39916024-39916824 31 0.66
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 30 1.2
05_04_0454 + 21383068-21384525 30 1.5
01_06_1792 - 39912714-39913559 29 2.0
11_06_0637 + 25715516-25716459,25718196-25718355 29 2.7
03_02_0362 - 7809752-7810357,7811018-7811914 29 2.7
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 3.5
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 3.5
10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335 28 4.7
10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317 28 4.7
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 28 4.7
09_02_0531 + 10312743-10313293,10314313-10315030 28 4.7
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 4.7
01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607 28 4.7
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 8.2
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 27 8.2
04_01_0394 - 5174718-5174801,5174914-5174959,5175900-5176013,517... 27 8.2
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 27 8.2
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +3
Query: 285 DYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKN-----NFNGDKSP---GNMQYGNKN 440
DY+ N G N+ GG + + N +NG Q N ++NG P GN QY N
Sbjct: 66 DYDYYNRGYSNNNGGYQNYNYNGNNSNGYQNYNYNGNGQGHYNGGYQPIHQGNGQYQNNG 125
Query: 441 DFGGPKQQNYNKNYGPKTYNN 503
++ G Y+ Y + YNN
Sbjct: 126 NYHG--DYGYDGQYA-ENYNN 143
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 109 YNGFHNQHPMPQPDRNEQFGKIPYIKGLPDFGG 207
Y G HN HP PQP+R G +P I+G + G
Sbjct: 285 YKGRHN-HPKPQPNRRLSAGAVPPIQGEERYDG 316
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +3
Query: 279 KNDY-NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGP 455
K+ Y N N + N+ G + +++NG + +N N Y N +
Sbjct: 731 KSGYGNNNNAWSSNNNGSNNAWSSTRDYDNGGRSDNNPYYNSSTWSSNSTYSNNAAWSSN 790
Query: 456 KQQNYNKNYGP-KTYNNQNAMGMSSLNLFLGN 548
N N + +YN+ +A +S N + G+
Sbjct: 791 SSYNSNSAWSSNSSYNSNSAWSNNSNNSWSGS 822
>01_05_0299 -
20595919-20595963,20596111-20596221,20596901-20596984,
20597350-20597450,20597584-20598301
Length = 352
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 267 FNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDF 446
FN++ YN ++G N +GG ++ FN P NN N + + G YG K
Sbjct: 124 FNKM-GGYNNSSNGGGN-YGG-NGGDVKSYFNKSVGRPASNNNNNNSNGGGGYYGKKGGD 180
Query: 447 GGPKQQNYNKN 479
G ++ + KN
Sbjct: 181 GAGGKKKHAKN 191
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +3
Query: 282 NDYNTKNDGNQND--FGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGP 455
N N D N N+ +GG + NN N K +N + G GN GG
Sbjct: 93 NSVNLPVDNNNNNKSYGGAAKI--NNNNVNAFGFNKMGGYNNSSNGG----GNYGGNGGD 146
Query: 456 KQQNYNKNYGPKTYNNQN 509
+ +NK+ G NN N
Sbjct: 147 VKSYFNKSVGRPASNNNN 164
>07_03_1075 + 23773279-23773516,23773527-23773723
Length = 144
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 237 DEQKLQPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRP 347
DEQ L ND+ E +DY++ ++ +D+ P + P
Sbjct: 68 DEQPLDSDNDWGEAPDDYDSLSEDAPDDYDSPSEDAP 104
>01_06_1793 - 39916024-39916824
Length = 266
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Frame = +3
Query: 282 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNN-FNGDKSPGNMQYGNKNDFGGPK 458
+ Y +DG + D NN + P N +N G YGN +GG
Sbjct: 96 SSYKYDDDGGERDRSYSNYGGYGNNEGYSSSAPSGYNPYNNGGGYGGPSYGNGGGYGGST 155
Query: 459 QQNYNKNYGPKTYNNQNAM 515
N YG +Y N A+
Sbjct: 156 YGN-GGGYGGSSYGNGGAI 173
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 351 NNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYNNQN 509
NN NN N +N N + S M +G +++ YN Y + NNQ+
Sbjct: 186 NNNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYF--DLVGYNSYYDNRIENNQD 236
>05_04_0454 + 21383068-21384525
Length = 485
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 345 PRNNFNNGNQPPKKNNFNGDKSPGNMQYGNK--NDFGGPKQQNYNKNYGPKTYNNQN 509
PRNN NN + P++ G K G+ Q G + N++ ++Q Y + N N
Sbjct: 250 PRNNNNNNRRRPRRPMRQGYKYNGHDQRGQQQVNNYSHGQRQVYGNGQDQRQQLNNN 306
>01_06_1792 - 39912714-39913559
Length = 281
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 291 NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNY 470
N N+G+ +D K ++ + ++ + N+ GN NK+ +GG N
Sbjct: 52 NNNNNGSDDDKDKNKHKITSSHKHKDDEKDRNNHSKDSHGGGNSSNYNKDSYGG-NSGNP 110
Query: 471 NKNYGPKT 494
N YG T
Sbjct: 111 NNYYGSST 118
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = +3
Query: 351 NNFNNGNQPPKKNN----FNGDKSPGNMQYGN---KNDFGGPKQQNYNK-NYGPKTYNNQ 506
NN NNG+ K N + K + + N K+ GG NYNK +YG + N
Sbjct: 52 NNNNNGSDDDKDKNKHKITSSHKHKDDEKDRNNHSKDSHGGGNSSNYNKDSYGGNSGNPN 111
Query: 507 NAMGMSS 527
N G S+
Sbjct: 112 NYYGSST 118
>11_06_0637 + 25715516-25716459,25718196-25718355
Length = 367
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 474 CYNFVV*DRQNHFYCHIAYFLVICLH*SCFSLVVG 370
C+ ++ + ++HFY IA FLV+ FS+V G
Sbjct: 242 CFLLLLIEEESHFYTIIAVFLVVAALPLFFSIVFG 276
>03_02_0362 - 7809752-7810357,7811018-7811914
Length = 500
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 255 PRNDFNEVKNDYNTKNDGNQND 320
P+NDF +V DY T DG Q D
Sbjct: 269 PKNDFLDVLLDYRTTEDGRQFD 290
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Frame = +3
Query: 252 QPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNF---NNGNQPPKKNNFNGDKSPGNM 422
QP + Y T D + N +Q P + N QP ++ + G +PG+
Sbjct: 424 QPYGSYPPASGGYQTGWDQSSNQQS--QQAPPGTGYDYYNQQQQPQQQQSAPGTAAPGDA 481
Query: 423 QYGNKNDFGGPKQQNYNKNYGPKTYNNQNAMGMSS 527
N + Q Y+ +Y ++ Q A SS
Sbjct: 482 TSYNSSQPPAYASQGYDSSYAQQSGGQQQAYDYSS 516
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 303 DGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGN 419
+G+ ND GP ++ + + G PP+K+NF GN
Sbjct: 427 EGSPND--GPTEYSETTSMDYGELPPEKSNFASTMLIGN 463
>10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335
Length = 227
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 264 DFNEVKNDYN---TKND---GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ 425
+FN ++ Y+ T++D G++N G P P +N+++ P ++NN G S
Sbjct: 125 EFNVLQTPYDHPMTEDDDFIGDKN--GSPGDVDPSSNYDSDCLPDQENN-TGSSSSSRRA 181
Query: 426 YGNKNDFG 449
G K+D G
Sbjct: 182 KGRKSDKG 189
>10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317
Length = 250
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 264 DFNEVKNDYN---TKND---GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ 425
+FN ++ Y+ T++D G++N G P P +N+++ P ++NN G S
Sbjct: 94 EFNVLQTPYDHPMTEDDDFIGDKN--GSPGDVDPSSNYDSDCLPDQENN-TGSSSSSRRA 150
Query: 426 YGNKNDFG 449
G K+D G
Sbjct: 151 KGRKSDKG 158
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 291 NTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGG--PKQQ 464
N + G GGP ++ N G PP + + G+ +PG Q G GG P Q
Sbjct: 296 NYQQGGAPGYQGGPPGYQGSNQGYQGPPPPPPSAYQGN-NPG-YQGGGPGYQGGNPPPYQ 353
Query: 465 NYNKNYGP 488
N Y P
Sbjct: 354 GGNPGYAP 361
>09_02_0531 + 10312743-10313293,10314313-10315030
Length = 422
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 339 FRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKN-----DFGGPKQQNYNK-NYGPKTYN 500
+R R + PP N+ + S G Q+G + GGP++ +++ + +
Sbjct: 21 WRQRKRRRKNSPPPANNDSDQYSSDGQRQHGTADLERAVTGGGPRRYQFHELAAATRDFA 80
Query: 501 NQNAMGMSSL-NLFLGNLTVQT 563
+ +G N++LG L V T
Sbjct: 81 EEEKLGQGGFGNVYLGRLAVGT 102
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +3
Query: 369 NQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPKTYN 500
N PP N+N YG QNY YG YN
Sbjct: 423 NYPPGPGNYNSYGPSQGPNYGQPQYPQSAPPQNYGPGYGDPRYN 466
>01_01_0740 - 5756491-5757054,5757247-5757407,5757580-5757607
Length = 250
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 264 DFNEVKNDYN---TKND---GNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQ 425
+FN ++ Y+ T++D G++N G P P +N+++ P ++NN G S
Sbjct: 94 EFNVLQTPYDHPMTEDDDFIGDKN--GSPGDVDPSSNYDSDCLPDQENN-TGSSSSSRRA 150
Query: 426 YGNKNDFG 449
G K+D G
Sbjct: 151 KGRKSDKG 158
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 122 TINIRCLSQTAMNNSVKFHTLKVFLILEDLKT 217
T ++ CL Q + N + HT +V L+L+D++T
Sbjct: 531 TDDLGCL-QRILTNGIIHHTRRVLLVLDDVQT 561
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 312 QNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKNDFGGPKQQNYNKNYGPK 491
QND K+ +NN N+ + +NN G+ + NK+ F G QN K++ +
Sbjct: 399 QNDGNSFKEQSVQNNGNSIEEQICENN--GNSCEVQIFQNNKDYFQGQASQNTEKSFIEQ 456
Query: 492 TYNN 503
+ N
Sbjct: 457 AFQN 460
>04_01_0394 -
5174718-5174801,5174914-5174959,5175900-5176013,
5176323-5176441,5176518-5176589,5176733-5176873,
5177016-5177096,5177378-5177479,5177828-5177865,
5177985-5178087,5178223-5178345,5181004-5181117
Length = 378
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 370 TNHQRKTTLMETNHQEICNMAIKMILAV-LNNKIITRIMGLKHTTTRMLWE 519
++H R+T L+E+ IC A ++ + N++ + +G+ H T WE
Sbjct: 216 SSHDRRTKLLESAVSSICRNATYVLSKIWANDEAVRESLGI-HKGTVTTWE 265
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = +3
Query: 366 GNQPPKKNNFN-GDKSPGN--MQYGNKNDFGGPKQQNYNKNYG 485
G P + F G++ G YG DFGG Y YG
Sbjct: 74 GGGAPSRGGFGRGERGRGRGGRGYGQNRDFGGDNANGYQGGYG 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,261
Number of Sequences: 37544
Number of extensions: 321820
Number of successful extensions: 803
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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