Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0292
         (480 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   3e-08
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    25   0.12 
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    23   7.2  
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    23   7.2  
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    23   7.2  
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    23   7.2  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   7.2  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    22   9.5  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 3e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 82  MRECISVHVGQAGVQIGNACWE 147
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 33.9 bits (74), Expect = 0.003
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 137 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPERQARTP 271
           P    T WS AS+   RCP+TR S      ST SS R  + +  P
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCP 63


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.0 bits (52), Expect(2) = 0.12
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 188 CPQTRPSGVETILSTLSSARPERQARTPCCLR 283
           C   RPS ++   ++ S  RP+  A +  C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195



 Score = 21.8 bits (44), Expect(2) = 0.12
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 131 VMPAGSFTAWSTASSLMARCPQTRPSGV 214
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 VDLVLDRIRKLADQCTGLQ 480
           VD VLD +RK  + C  LQ
Sbjct: 9   VDAVLDVVRKECENCDCLQ 27


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 VDLVLDRIRKLADQCTGLQ 480
           VD VLD +RK  + C  LQ
Sbjct: 9   VDAVLDVVRKECENCDCLQ 27


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 VDLVLDRIRKLADQCTGLQ 480
           VD VLD +RK  + C  LQ
Sbjct: 9   VDAVLDVVRKECENCDCLQ 27


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 424 VDLVLDRIRKLADQCTGLQ 480
           VD VLD +RK  + C  LQ
Sbjct: 9   VDAVLDVVRKECENCDCLQ 27


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 111  PSRSPDR*CLLGALLPGARHPA*WPDAHRQDHR 209
            P+  P +  L+  +LP +  PA  P   R+D R
Sbjct: 1107 PAVEPAKKTLVATILPNSAKPAQQPPPLRRDAR 1139


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 238 RKC*KNRLHPRWSCLWASGHQAGCRAPGSKAPSRHYR 128
           RK   +R +PR     + G    CR+P ++  SR  R
Sbjct: 248 RKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTR 284


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,592
Number of Sequences: 2352
Number of extensions: 10817
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)