Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0289
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   0.77 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   3.1  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   5.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   5.4  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   7.2  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   9.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   9.5  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   9.5  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 374 RSHAVTAASLHCLGSFGTPRRSCSFSQEAKVAFSASA 264
           R+ + T AS+  LGS   P RS S++   KVA   S+
Sbjct: 356 RAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTSS 392


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 162 ARGSSASWGSHFMPSALPPP 103
           +RGS A++ + + P+A+PPP
Sbjct: 199 SRGSPANYNTPYYPTAIPPP 218


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 296 QEAKVAFSASAIFLWCPGSVAAP 228
           Q+AK  F     FLWCP     P
Sbjct: 896 QKAKKDFVQDGFFLWCPSKDVVP 918


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 134 EPQEAEEPRAMQKVPSLSDLSDPE 205
           EPQE E P+  +++ ++++L D E
Sbjct: 121 EPQEIESPQGPKELTAVTELDDDE 144


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 279 GHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLIRGCRPLTIRASSGQGHLCDG 458
           G L+ +G G   PR A R+     +SS+ + A GG  + +RG R      SSG  H+  G
Sbjct: 481 GMLKNVGNG---PRNAPRN-----NSSNNLHAQGGMPMNMRGPRGAPRNNSSGDLHIQSG 532


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 74  TRHASLEEAPRRSEPRKRL 18
           T H  L+E+P  SEP K L
Sbjct: 241 TYHLYLDESPEESEPEKEL 259


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -3

Query: 531 FVRSLDVP---KYVSHKCGRSG 475
           FV  LD P   K  SH+CGR+G
Sbjct: 330 FVLQLDPPLDPKSFSHRCGRAG 351


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 425 RELRARTSVRWAARSSWPERPHLWETYFGTSRDL 526
           + +  RT    A    WP+  +    +FGT +DL
Sbjct: 89  KNIEGRTKYGEAYHGYWPQDLYTLNPHFGTEQDL 122


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 250 HHKKMAEALKATFASWEKEQLRLGVPKDPRQWSEAAVTA 366
           HHK    ALK    + E+E+ RL     P +  +A + A
Sbjct: 426 HHKDYKHALKKRITALEEEKNRLIKEIGPEKVKKAGILA 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,509
Number of Sequences: 5004
Number of extensions: 41601
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)