Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0289
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0199 + 32310272-32311432 33 0.15
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 32 0.34
09_01_0183 - 2652173-2653924 31 0.44
12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648 30 1.4
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926... 30 1.4
06_03_0246 + 18672704-18673111,18674069-18674164,18674362-186745... 29 1.8
06_02_0100 + 11735424-11735958,11736168-11736916,11752859-117531... 29 1.8
02_04_0379 - 22491069-22491503 29 1.8
02_01_0784 + 5843029-5843427,5843699-5844532 29 1.8
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 29 3.1
08_01_0434 + 3809681-3810016,3810039-3811100 28 4.1
06_03_1083 + 27478595-27478996 28 4.1
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 28 4.1
06_01_0896 - 6889754-6890236 28 5.5
06_01_0016 + 184804-185025,185121-185237,185324-185737,185827-18... 28 5.5
05_04_0199 + 18980017-18980759,18981478-18981532 28 5.5
02_03_0163 + 15859293-15860333 28 5.5
11_06_0161 + 20811333-20811826,20812731-20812773,20813012-20813137 27 7.2
07_01_0707 - 5335643-5336905 27 7.2
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 27 7.2
12_02_0634 + 21416205-21416954 27 9.6
09_03_0027 - 11690348-11690828,11694815-11695749 27 9.6
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 27 9.6
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217... 27 9.6
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822... 27 9.6
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820... 27 9.6
>03_06_0199 + 32310272-32311432
Length = 386
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 230 PAMGCLEKPLGQKDRRARVLSALHGAPQLPG-AHTLCHRRCHHPR 99
PA G +P+ ++ R AR AL GA L G CHRR HPR
Sbjct: 87 PARGARPQPVHRR-REARRHDALRGAAALRGRVRCPCHRRFAHPR 130
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 231 CRH*PRAPQEDGRGAEGHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGG 383
C AP GRG +G +RLL E AAP + + + VA++ G
Sbjct: 149 CGRDAAAPVARGRGCDGGVRLLDEATAAPLAGSKDDSAVPGVVEKVASVDG 199
>09_01_0183 - 2652173-2653924
Length = 583
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 285 LRLLGEGAAAPRRAKRSKTVERSSSD-----GVAALGGSRVLIRGCRP 413
LR+L G+A R + +E ++D VAA GG +LI CRP
Sbjct: 251 LRVLDSGSAPATRERAVAAIEAITADVGSAWAVAAYGGVPILINACRP 298
>12_02_1043 - 25646075-25646437,25646655-25647959,25648394-25648648
Length = 640
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 462 RGVRGQSA-RIYGRHTLEHLEILQKD 536
RGVRG+ A R HTL+HLE+L D
Sbjct: 314 RGVRGRHAVRRLALHTLDHLEVLDID 339
>07_03_1386 -
26192019-26192073,26192272-26192397,26192570-26192622,
26192722-26192807,26192896-26193017,26193096-26193155,
26193787-26193866,26193949-26194087,26194273-26194367,
26194792-26194860,26195015-26195131,26195839-26195913,
26196590-26196961
Length = 482
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 138 GSHFMPSALPPPSSHKSSLRLN 73
GSHF P +PPP ++K+ +N
Sbjct: 153 GSHFEPKTIPPPLTNKADWEIN 174
>06_03_0246 +
18672704-18673111,18674069-18674164,18674362-18674571,
18675780-18675851,18675898-18675945
Length = 277
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 35 PTAVAPPP-RKHVSFSLR-LDLCDEGGGNADGIKCEPQEAEEPRAMQKVPSLSDLS 196
P A++P P ++H S +++ LD G ++ + EP+ A EP+ + P + D S
Sbjct: 12 PAAISPTPSQQHASSTVKTLDDRRPAGTSSSAGETEPKAAVEPQEYPRRPGVPDCS 67
>06_02_0100 +
11735424-11735958,11736168-11736916,11752859-11753118,
11760085-11760124
Length = 527
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 243 PRAPQEDGRGAEGHLRLLGEG--AAAPRRAKRSKTVERSS--SDGVAALGGSRVLIRGCR 410
P PQ D GA L + G G A A R K+ + V+ S SD VA+LGG+ R
Sbjct: 302 PPCPQ-DVAGANVLLAIAGAGSMAGAAARKKKKEVVQVSGGFSDSVASLGGAPTSPALRR 360
Query: 411 PL 416
PL
Sbjct: 361 PL 362
>02_04_0379 - 22491069-22491503
Length = 144
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +3
Query: 219 SHRRCRH*PRAPQEDGRGAEGHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLI 398
SHRR A +DGRG + +R TV R GV A G RV
Sbjct: 28 SHRRTEGAAPAKDDDGRGTASAKQRAAPWRGGAVEGRRGGTVARRGDGGVGAARG-RVAR 86
Query: 399 RG 404
RG
Sbjct: 87 RG 88
>02_01_0784 + 5843029-5843427,5843699-5844532
Length = 410
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 492 KCGRSGHELLAAHRTDVLALSSRELLKGDT 403
+CG+ GHEL+ R + L L +++ +G+T
Sbjct: 148 RCGKVGHELVHTSRDNRLLLKKKKVYEGNT 177
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 354 SSDGVAALGGSRVLIRGCRPLTIRASSGQGHLCDGPRGV 470
S DGVA+L GS++L+ G +G + DG GV
Sbjct: 66 SRDGVASLRGSQILVLGIDYTNSSFVAGHKRVADGGDGV 104
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 156 GSSASWGSHFMPSALPPPSSHKSSLRLN 73
G + W H +P PPP SHKS L ++
Sbjct: 263 GLNEDWRCHALPPP-PPPLSHKSDLHVH 289
>06_03_1083 + 27478595-27478996
Length = 133
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +3
Query: 297 GEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLIRGCRPLTIRASSGQG 443
G G A KR S SD GG + RGC P+ + + G G
Sbjct: 22 GGGGGAAAAVKRGLMRRLSFSDRAGGGGGGDGVPRGCVPVMVGDNGGDG 70
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -1
Query: 512 FQSMSPINAG-ALATNSSRPIAQMSLP*ARANC*RATPSNENSRAAQRSHAVTAASLHCL 336
FQ + P+NAG L + P A+ A N P + N+ Q ++SL
Sbjct: 142 FQEIVPLNAGNVLVVEDNEPAARWL---ALINRTLNKPVDSNADIFQHK---PSSSLDST 195
Query: 335 GSFGTPRRSCSFSQEAKVAFSASAIF 258
S + SFS + A +SAIF
Sbjct: 196 SSLSSSNLDASFSSRTRTASGSSAIF 221
>06_01_0896 - 6889754-6890236
Length = 160
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 410 ATPSNENSRAAQRSHAVTAA--SLHCLGSFGTPRRSC 306
+TPS+ AA S A AA L C G G+ RR C
Sbjct: 38 STPSSSTLSAAGSSGATAAAVIDLICAGELGSRRRRC 74
>06_01_0016 +
184804-185025,185121-185237,185324-185737,185827-186888
Length = 604
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 466 PRGPSHRCPCPELARIVKGRHPLMRTLEPPSAATPS 359
PRGP R PC +L+R V+ PL+ L S+++ S
Sbjct: 15 PRGPLRR-PCADLSRRVRLLAPLLDHLPASSSSSSS 49
>05_04_0199 + 18980017-18980759,18981478-18981532
Length = 265
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 153 SSASWGSHFMPSALPPPSSHKSSLRLNET 67
S ++ G H +PS PPP S SS T
Sbjct: 37 SRSAGGGHHVPSVYPPPPSSSSSSACRHT 65
>02_03_0163 + 15859293-15860333
Length = 346
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 281 AFSASAIFLWCPGSVAAPAMGCLEKPLGQK 192
AFS +A+F++C V PA+G LG +
Sbjct: 156 AFSLNAVFMYCFLDVVLPALGAAGVALGME 185
>11_06_0161 + 20811333-20811826,20812731-20812773,20813012-20813137
Length = 220
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 472 RTPRGPSHRCPCP 434
R+P GPS RC CP
Sbjct: 200 RSPTGPSRRCACP 212
>07_01_0707 - 5335643-5336905
Length = 420
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 249 APQEDGRGAEGHLRLLGEGAAAPRRAKRSKTV-ERSSSDGVAALGGSRVLIRGCRPLT 419
AP RG+ GH+ L+G RR + + V E S+ +A + G+ R P+T
Sbjct: 85 APCRTSRGSGGHVDLVGLAGDVVRRTRAEEGVLELSTCGDLACVVGTDRRARVLHPVT 142
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 324 AKRSKTVERSSSDGVAALGGSRVLIRGCRPLTIRAS 431
++R K +RSS DG GG+RV R L AS
Sbjct: 36 SRRKKPDDRSSIDGAEVEGGARVASEDSRRLGFGAS 71
>12_02_0634 + 21416205-21416954
Length = 249
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 348 RSSSDGVAALGGSRVLIRGCRPLTIRASSGQGHLCDGPRG 467
R G A G R + G P RA G+G CD RG
Sbjct: 124 RRRRSGGDATGRRRGRVSGAFPAKRRADRGRGGSCDAGRG 163
>09_03_0027 - 11690348-11690828,11694815-11695749
Length = 471
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 135 SHFMPSALPPPSSHKSS 85
+H P+ALPPPS+ +SS
Sbjct: 438 AHRYPAALPPPSTRRSS 454
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 35 PTAVAPPPRKHVSFSLRLDLCDEGGGNADGI-KCEPQEAEEPRAMQK 172
P +PPP S S + + +GGG A G+ E +EA P +K
Sbjct: 86 PPPRSPPPAPTKSLSPQPAVVSQGGGGAGGVGGGEEEEANPPIRWRK 132
>08_01_0269 -
2172363-2172538,2172632-2172697,2172790-2172887,
2173442-2173791
Length = 229
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +1
Query: 154 APCNAESTLALRSF*PRGFSRHPIAGAATDPGHHKKMAEALKATFASWEKEQLRLGVPKD 333
A A TLA+R G +R P+ AA G + E + + + + PKD
Sbjct: 39 AAAAAFPTLAVRG---SGKARQPVVAAAAGAGTGSEQRETILLPGCDYNHWLIVMEFPKD 95
Query: 334 PRQWSEAAVTAWLRWAA 384
P E + +L A
Sbjct: 96 PAPTREQMIDTYLNTLA 112
>04_01_0625 -
8222105-8222462,8222574-8222926,8223029-8223204,
8223318-8223555,8226983-8227423
Length = 521
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 363 GVAALGGSRVLI-RGCRPLTIRASSGQG 443
GV+ L + L+ RGCRP+ A +G G
Sbjct: 12 GVSGLAACKQLLERGCRPVVFEADTGVG 39
>04_01_0624 -
8202783-8203140,8203242-8203594,8203697-8203872,
8203993-8204230,8208308-8208748
Length = 521
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 363 GVAALGGSRVLI-RGCRPLTIRASSGQG 443
GV+ L + L+ RGCRP+ A +G G
Sbjct: 12 GVSGLAACKQLLERGCRPVVFEADTGLG 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,194
Number of Sequences: 37544
Number of extensions: 396578
Number of successful extensions: 1763
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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