Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0289
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 62 2e-10
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 51 7e-07
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 34 0.085
SB_38452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_35182| Best HMM Match : CUB (HMM E-Value=0) 29 3.2
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6) 29 3.2
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_41851| Best HMM Match : Pkinase (HMM E-Value=0) 27 9.8
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/65 (41%), Positives = 43/65 (66%)
Frame = +1
Query: 313 RLGVPKDPRQWSEAAVTAWLRWAAREFSLEGVAL*QFARAQGKDICAMGREEFVARAPAF 492
R+ VP DP W++ V W+ WA +EFSL+ + + +F G+D+C + R++F+ APA+
Sbjct: 158 RVIVPADPLCWTKEHVRQWILWAIKEFSLKDIDIDRF-NIDGRDLCRLTRDDFMKLAPAY 216
Query: 493 MGDIL 507
GDIL
Sbjct: 217 NGDIL 221
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +1
Query: 322 VPKDPRQWSEAAVTAWLRWAAREFSLEGVAL*QFARAQGKDICAMGREEFVARAP 486
VP DPR WS+ V WL+WA ++++ VA +F GK IC + E FV R P
Sbjct: 118 VPPDPRLWSKWDVLEWLKWATERYNVKDVAADKFL-MNGKGICMLPPEGFVYRVP 171
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 331 DPRQWSEAAVTAWLRWAAREFSLEGVAL*QFARAQGKDICAMGREEFVARAP 486
DPR W+ VT+WLRW + +SLE V L +F GK +C M + F+ R P
Sbjct: 163 DPRLWTREDVTSWLRWISEAYSLENVKLDRF-EMNGKALCLMTLDMFLYRVP 213
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 33.9 bits (74), Expect = 0.085
Identities = 35/120 (29%), Positives = 50/120 (41%)
Frame = +3
Query: 129 SVSPRKLRSPVQCRKYPRSPIFLTQRLL*TSHRRCRH*PRAPQEDGRGAEGHLRLLGEGA 308
S SP+K RSP + R S + + R SHR+ R R+ + + + +
Sbjct: 248 SRSPQKSRSPQRSRSPRSSKRYRSSR----SHRKHRSHSRSRSPRSKRSRSPRKRRRSKS 303
Query: 309 AAPRRAKRSKTVERSSSDGVAALGGSRVLIRGCRPLTIRASSGQGHLCDGPRGVRGQSAR 488
+PRR + S + R S + SR+ R P IR S PRG R QS R
Sbjct: 304 RSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRS----RPPRGRRSQSPR 359
>SB_38452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 44 VAPPPRKHVSFSLRLDLCDEGGGNADGIKCEPQEAEEPR-AMQKVPS 181
++P ++ + SL L +GGG +G++ EAE PR +++ +PS
Sbjct: 79 LSPSSKQRLDLSLDLQPLVKGGGFVNGLRQSLAEAESPRLSVRSLPS 125
>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
Length = 963
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 325 PKDPRQWSEAAVTAWLRWAAR 387
P++PRQW+ VT+W + AR
Sbjct: 419 PENPRQWTLVGVTSWGKGCAR 439
>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
Length = 263
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Frame = +3
Query: 318 RRAKRSKTVERSSS-------DGVAALGGSRVLIRGCRPLTIRASSGQG 443
RRA+ ++TV R+ S + VAA GG+ L+ G + L +R + G+G
Sbjct: 193 RRAEWAQTVHRARSRSIPARVESVAAEGGAETLVVGKQELFLRETHGKG 241
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 288 RLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSR 389
RLL E R A+RSK + RS+SD +L R
Sbjct: 1152 RLLEERVRPSRPARRSKQLSRSTSDPRGSLSSER 1185
>SB_41851| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 967
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 413 RATPSNENSRAAQRSHAVTAASLHCLGSFGTPRRSCSFSQE 291
R TP AA S A AA +FG SC FS+E
Sbjct: 112 RVTPPPSTPEAAASSSAAAAAGKEDEEAFGEELVSCLFSRE 152
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 359 TAASLHCLGSFGTPRRSCSFSQEAKVAFSASAIFLWCPGSVAAPA 225
T+ ++ L S +P S + A +A AS L P S+A+PA
Sbjct: 681 TSFAIALLASTASPASPASLASPASLASPASPASLASPASLASPA 725
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,461
Number of Sequences: 59808
Number of extensions: 383259
Number of successful extensions: 1301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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