Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0289
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.49 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.49 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 176 PSLSDLSDPEASLDIPSQV 232
           P+LS LSDPE  +D  +Q+
Sbjct: 269 PNLSKLSDPEVWIDAVTQI 287


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 176 PSLSDLSDPEASLDIPSQV 232
           P+LS LSDPE  +D  +Q+
Sbjct: 322 PNLSKLSDPEVWIDAVTQI 340


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 255 QEDGRGAEGHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLIRGC 407
           Q+  + +  +L +    A++PR    + T   S+S   A+   + +++ GC
Sbjct: 807 QQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 318 RRAKRSKTVERSSSD 362
           ++AKRSK+++  SSD
Sbjct: 861 QKAKRSKSLQEVSSD 875


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 318 RRAKRSKTVERSSSD 362
           ++AKRSK+++  SSD
Sbjct: 899 QKAKRSKSLQEVSSD 913


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,084
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)