Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0289
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24590.1 68417.m03523 expressed protein 30 1.1
At3g19220.1 68416.m02439 expressed protein 29 1.5
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 29 2.6
At1g05940.1 68414.m00623 amino acid permease family protein low ... 29 2.6
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi... 28 3.5
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ... 28 3.5
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 4.6
At4g36850.1 68417.m05225 PQ-loop repeat family protein / transme... 27 6.1
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 27 6.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 8.0
At5g09930.1 68418.m01148 ABC transporter family protein 27 8.0
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 8.0
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 8.0
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 27 8.0
>At4g24590.1 68417.m03523 expressed protein
Length = 241
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 98 DEGGGNADGIKCEPQEAEEPRAMQKVPSLSDLSDPEA 208
DE GG P+E EE + ++ PS SD DPEA
Sbjct: 50 DENGGEQSE---SPEEEEEEESDREEPSASDPGDPEA 83
>At3g19220.1 68416.m02439 expressed protein
Length = 187
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = +3
Query: 219 SHRRCRH*PRAPQEDGRGAEGHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLI 398
SHR PR P R LG+G PR A + RS VAA GG+
Sbjct: 12 SHRPLVFLPRLPSRSLRCRAAADIPLGDGIRLPREADSTSDTARSRDVSVAA-GGNGEGA 70
Query: 399 RGCRPLTIRASSGQGHLCD 455
+ + + + SG+ +L D
Sbjct: 71 KWRKRRLLWSKSGESYLVD 89
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 256 KKMAEALKATFASWEKEQLRLGVPKDPRQWSEA 354
K + A KA + EKEQ RL +PK R + EA
Sbjct: 49 KSVVHAKKAKHHAAEKEQKRLHLPKIDRNYGEA 81
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = -3
Query: 171 FCIARGSSASWGSHFMPSA-----LPPPSS 97
F R SSA+W SHF SA LPPPSS
Sbjct: 7 FSNQRLSSATWFSHFRASALRSKSLPPPSS 36
>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 688
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 255 QEDGRGAEGHLRLLGEGAAAPRRAKRSKTVERSSSDGVAALGGSRVLIRGCRPLTIRASS 434
++D AE R + + A RR V R+ + + L G + +RG RP ++ SS
Sbjct: 38 EDDAIEAEDRRRSVTDRAYWRRRIHSICAVRRNPDEALRILDG--LCLRGYRPDSLNLSS 95
Query: 435 GQGHLCDGPR 464
LCD R
Sbjct: 96 VIHSLCDAGR 105
>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 704
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 446 SVRWAARSSWPERPHLWETYFGTSRDLTK-RC 538
++ W+ S W P W+TY+ + D+T RC
Sbjct: 156 AIPWSRDSKWECLPFNWKTYWSSGDDVTHFRC 187
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 125 IKCEPQEAEEPRAMQKVPSLSDLSDPEASLDIP 223
+KC E R +K+P + DP+ L IP
Sbjct: 44 VKCSASGTERVRESKKLPPKDPIEDPKPQLPIP 76
>At4g36850.1 68417.m05225 PQ-loop repeat family protein /
transmembrane family protein similar to SP|Q10482 Seven
transmembrane protein 1 {Schizosaccharomyces pombe};
contains Pfam profile PF04193: PQ loop repeat
Length = 374
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 371 SHAVTAASLHCLGSFGTPRRSCSFSQEAKVAFSASAIFLWCPGSVAAPAMGCLEKP 204
S A+ ASL C G P+ +F ++ S S + W G + +GCL +P
Sbjct: 34 SFALGIASLLCWGVAEIPQVITNFRTKSSNGVSLSFLLAWVAGDI-FNLVGCLLEP 88
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 165 IARGSSASWGSHFMPSALPPPSSHKSSLRLNE 70
I RGS + G P + PPP H+ +L + E
Sbjct: 48 ILRGSGSGRGEENAPLSQPPPHLHQQNLFIQE 79
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 156 GSSASWGSHFMPSALPPPSSHK 91
GS + GS ++PS LPPP + K
Sbjct: 77 GSVSKKGSRYVPSFLPPPLASK 98
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 265 AEALKATFASWEKEQLRLGVPKD 333
AE ++A +A+WEK+Q + KD
Sbjct: 335 AELVEAQYAAWEKQQKEIEATKD 357
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 481 LWPRTPRGPSHRCPCPELARIVKGRHPLMRTLEPPSAATPS 359
LWPR R S P + G P + PS++TP+
Sbjct: 887 LWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPA 927
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 481 LWPRTPRGPSHRCPCPELARIVKGRHPLMRTLEPPSAATPS 359
LWPR R S P + G P + PS++TP+
Sbjct: 960 LWPRVQRSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPA 1000
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 182 ARVLSALHGAPQLPGAHTLCHRRCHHPR 99
++V S LH P PG + + HHP+
Sbjct: 29 SQVASGLHAPPPPPGMRPMSNPNIHHPQ 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,397
Number of Sequences: 28952
Number of extensions: 255367
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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