Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    35   2.2  
UniRef50_UPI0000DD80EA Cluster: PREDICTED: hypothetical protein;...    34   3.9  
UniRef50_A0BN02 Cluster: Chromosome undetermined scaffold_117, w...    34   3.9  
UniRef50_O49139 Cluster: DNA (cytosine-5)-methyltransferase CMT1...    34   3.9  
UniRef50_Q859F9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q4ULM7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_UPI0000D56D08 Cluster: PREDICTED: similar to CG7627-PA;...    33   9.0  
UniRef50_A1W7W3 Cluster: Putative uncharacterized protein; n=2; ...    33   9.0  
UniRef50_Q96JK9 Cluster: Mastermind-like protein 3; n=28; Mammal...    33   9.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 375 DSEKTRYCP------T*PKHQPAEFLAGLLSGSLFRTGSKFIREAATLELLVSLGSARVA 536
           D   T YCP      T PK QP +FLAG    S FR+  +F  EA  L  LV   S R++
Sbjct: 53  DLSSTGYCPCRVRRATNPKTQPMKFLAGSSQSSRFRSDGRFC-EALLLLGLVLANSLRLS 111


>UniRef50_UPI0000DD80EA Cluster: PREDICTED: hypothetical protein;
           n=3; Homo/Pan/Gorilla group|Rep: PREDICTED: hypothetical
           protein - Homo sapiens
          Length = 1559

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -1

Query: 617 SGPKPFLVSPGKGGRARAQPGGVGFTSSYP------SASKGDQQLKSSCFAN 480
           SG +P L SPG GGRA+ Q G   +    P      S   G +Q+  +CFAN
Sbjct: 524 SGGRPLLTSPGNGGRAQWQSGRTPYLGRDPLLRGFLSLELGGEQV--ACFAN 573


>UniRef50_A0BN02 Cluster: Chromosome undetermined scaffold_117, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_117, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1718

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
 Frame = -3

Query: 324  SDQNRNKITCLYYTMYSVRDKIRKRRPGVANSAVT--------THHTSTRDACN*LKSSK 169
            S+Q+ +     +Y +Y+  D I+ +     N   T         +H S  +  N   S  
Sbjct: 1263 SEQDTSAWNAAFYILYNQLDFIQDQNQNQTNQMPTYVNLLLDFPYHKSAYENINQAFSDY 1322

Query: 168  LYYCLHCFVRANRVLLALNIVIIGFVSFIKLLL*HKLFSYIRR 40
            +   +  F  + + L+ + IV+   VSFI L++ H  F Y+++
Sbjct: 1323 VQLSIDNFSDSQKALIIILIVLSIIVSFISLIVYHNYFKYMKK 1365


>UniRef50_O49139 Cluster: DNA (cytosine-5)-methyltransferase CMT1;
           n=4; Arabidopsis|Rep: DNA (cytosine-5)-methyltransferase
           CMT1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 791

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -1

Query: 512 DQQLKSSCFANEFTTGPE*RPAEKSGEKLSGLMF---RLGGTITCLLRIRMPF*HQTYNT 342
           D++++ +   +E +TG E  P E   EK  G+MF   +  G  T  L +R    + +Y+T
Sbjct: 316 DEEVEENDDIDEASTGAELEPGEFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDT 375

Query: 341 FYSYSSRTRIETKSRAYI 288
           +  YS     + K + Y+
Sbjct: 376 WEPYSGLGNCKEKLKEYV 393


>UniRef50_Q859F9 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas phage gh-1|Rep: Putative uncharacterized
           protein - Pseudomonas phage gh-1
          Length = 169

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 474 KFIREAA-TLELLVSLGSARVAASKSHPSWLSPCSPTFP 587
           K++++    +++L SLG   VA  K HP W++P +P  P
Sbjct: 8   KYLKQGEQAVDVLKSLGYTYVANGKEHPHWVAPVNPLDP 46


>UniRef50_Q4ULM7 Cluster: Putative uncharacterized protein; n=1;
           Rickettsia felis|Rep: Putative uncharacterized protein -
           Rickettsia felis (Rickettsia azadi)
          Length = 202

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 399 DNNVSSQ-NPNAILTSDIQYILQLLISDQNRNKITCLYYTMYSVRD 265
           D ++ S+ + N +LT   +Y++ L+ S +N N + C Y   YS++D
Sbjct: 26  DEDIFSELDSNTLLTELEKYLIDLVDSKKNSNIVICTYLQGYSIQD 71


>UniRef50_UPI0000D56D08 Cluster: PREDICTED: similar to CG7627-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG7627-PA - Tribolium castaneum
          Length = 1235

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -3

Query: 117 LNIVIIGFVSFIKLLL*HKLFSYIR 43
           L++V+I  +SFI+LL+ H+ FSY++
Sbjct: 132 LSVVMISLMSFIRLLVFHRFFSYVK 156


>UniRef50_A1W7W3 Cluster: Putative uncharacterized protein; n=2;
           Acidovorax sp. JS42|Rep: Putative uncharacterized
           protein - Acidovorax sp. (strain JS42)
          Length = 497

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = -3

Query: 408 VRWDNNVSSQNPNAILTSDIQYILQLLISDQNRNKITCLYYTMYSVRDKIRKRRPGVANS 229
           V W +N  +    A LT+D+   L+L++ + +   I  L Y +  + D++R+R P +   
Sbjct: 275 VEWPSNYGALLTLAWLTADLPARLELMLEELHAPGIEGLLYQLPDLDDELRRRLPDLLGP 334

Query: 228 AVTTHH 211
           A   HH
Sbjct: 335 A--WHH 338


>UniRef50_Q96JK9 Cluster: Mastermind-like protein 3; n=28;
           Mammalia|Rep: Mastermind-like protein 3 - Homo sapiens
           (Human)
          Length = 1133

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 620 TSGPKPFLVSPGKGGR-ARAQPGGVGFTSSYPSASKGDQQL 501
           T+GP    V PG GG  + A P G GF  S P A+   Q L
Sbjct: 699 TTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMKQML 739


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,390,412
Number of Sequences: 1657284
Number of extensions: 13543945
Number of successful extensions: 38191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38053
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)