Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    29   0.86 
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   2.0  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.0  

>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 418 SPLSFSPDFSAGRYSGPVVNSFAKQLLLSCWSPLE 522
           S  S SPD  AGR   PV+N    + L+S W+ LE
Sbjct: 163 SDSSISPDTFAGR---PVLNYLLAENLISAWNSLE 194


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 557 GGVGFTSSYPSASKGDQQLKSSCFANEFTTGP 462
           G  GF S+YP A+   + L +S F ++F +GP
Sbjct: 197 GHPGF-SAYPQANMSPEDLFNSFFGDQFFSGP 227


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 294 LYYTMYSVRDKIRKRRPGVANSAVTTHHTSTR 199
           L Y+   +R  IR  +  V  SAV  HH +TR
Sbjct: 85  LDYSQTPIRLAIRSGKKSVHKSAVVRHHNTTR 116


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -3

Query: 396 NNVSSQNPNAILTSDIQYILQLLISDQNRNKIT 298
           N+++++ PN+++  D   I+ L  +DQ+ N+ T
Sbjct: 353 NDLNNEEPNSVVAEDGSEIITLDENDQSPNEAT 385


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 56  NNLCYNNNFMKLTKPMMTIFNARRTRFALTKQCK 157
           NNL Y     +L K M  +FN  +TR  L  +CK
Sbjct: 135 NNLNYRTLKFRLGK-MCLLFNDEKTRMFLAFECK 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,494
Number of Sequences: 5004
Number of extensions: 55860
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)