Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0327 - 19607989-19608023,19608268-19608426,19608440-19608914     31   1.2  
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    29   3.6  
01_06_1697 - 39260157-39260160,39260232-39260313,39260339-392604...    29   3.6  
03_02_0797 - 11296426-11297258,11297745-11297901                       29   4.8  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     29   4.8  

>06_03_0327 - 19607989-19608023,19608268-19608426,19608440-19608914
          Length = 222

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 620 TSGPKPFLVSPGKGGRARAQPGGVG 546
           T G KP L SP +G R ++QP GVG
Sbjct: 58  TVGIKPLLRSPEEGERKQSQPDGVG 82


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 184 VKVVEAVLLFTLFCESESCSPC 119
           VK VEA   F  FC+ E  SPC
Sbjct: 68  VKTVEAATKFLSFCDPEMASPC 89


>01_06_1697 -
           39260157-39260160,39260232-39260313,39260339-39260405,
           39260721-39260813,39260984-39261034,39261481-39261637,
           39262375-39262511
          Length = 196

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 345 IVCLMSKWHSDSEKTRYCPT*PKHQPAEFLAGLLSGSLFRT-GSKFIREAATLELLVSLG 521
           IVC +   H  SE TR       H P + +AG L GS+  T G  F+  +   ELL   G
Sbjct: 120 IVCELPSEHPLSE-TRPLRELLGHTPTQVVAGALLGSMLATAGQMFLVVSGGWELLAFEG 178

Query: 522 SAR 530
             R
Sbjct: 179 DLR 181


>03_02_0797 - 11296426-11297258,11297745-11297901
          Length = 329

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 611 PKPFLVSPGKGGRARAQPGGVGFTSSYPSASKGDQQLKSSCFANEFTTGPE*RPAE 444
           P P L S   G  + +   G G   S+P+ + G +   ++C A+  T G   R  E
Sbjct: 213 PAPELSSTTAGSSSLSTDSGAGAQPSWPTQADGAEWFTTACDASSATGGVAMRDTE 268


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 156 LHCFVRANRVLLALNIVIIGFVSFIKLLL*HKLFSYIRR 40
           LH     N VL  +++ ++GFVSFI LL     F  +RR
Sbjct: 337 LHVSPVVNHVLWWISLALMGFVSFIYLLKVVFYFEAVRR 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,713,819
Number of Sequences: 37544
Number of extensions: 359253
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)