Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -2

Query: 625 RLLVARSPFLFHQGKVGEQGLSQEGWDLLAATRALPRETNNSRVAASRMNLLPVRNSDPL 446
           R +VA  PF     +V   G+   G D     R + R+    RV     N LP+R   P 
Sbjct: 287 RPMVAAQPFSIGGNQVEYGGIG--GMDSRMQQRGVVRDGPQYRVMNDFGNGLPMRGQLPR 344

Query: 445 RSPARNS 425
            SPA N+
Sbjct: 345 NSPAANA 351


>Z81117-1|CAB03312.1|  431|Caenorhabditis elegans Hypothetical
           protein T06E6.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 183 LKSSKLYYCLHCFVRANRVLLALNIVII 100
           L+S KL + ++C  R NRVLL  N+ I+
Sbjct: 284 LQSRKLIHKIYCKTRLNRVLLRDNLSIL 311


>Z34802-4|CAA84335.4|  365|Caenorhabditis elegans Hypothetical
           protein M88.4 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 523 LPRETNNSRVAASRMNLLPVRNSDPLRSPARNSAG 419
           +PR  NNS  + ++  L P R+    RS +R++AG
Sbjct: 166 VPRNNNNSEGSVNQNALRPQRSCSQSRSVSRSTAG 200


>AF016427-8|AAB65355.1|  513|Caenorhabditis elegans Hypothetical
           protein F32D1.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 526 LG*LLVNPTPPG*ALARPPFPGETRKGFGP 615
           +G +  +  PPG A+  P F   +R GFGP
Sbjct: 335 MGMMSTSLPPPGFAMPPPQFQQHSRAGFGP 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,356
Number of Sequences: 27780
Number of extensions: 317244
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)