Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.70 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/75 (20%), Positives = 33/75 (44%)
 Frame = -3

Query: 369  AILTSDIQYILQLLISDQNRNKITCLYYTMYSVRDKIRKRRPGVANSAVTTHHTSTRDAC 190
            A L+  +  ++ ++++   R  +    Y+ Y +R    + +PG ++ A      +   AC
Sbjct: 1000 ATLSGVLVLLVIIVLAFVFRESVGAWAYSKYGLR--FLRAKPGKSSGAAAMASAAPMPAC 1057

Query: 189  N*LKSSKLYYCLHCF 145
                  +LY C  C+
Sbjct: 1058 FDSDRERLYDCYVCY 1072


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 367 GIRILRRHVIVPPNLN-ISPLSFSPD 441
           GIR+ R  ++ PP+ N +SP+  SPD
Sbjct: 426 GIRVERDPILTPPSSNPVSPVP-SPD 450


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 531 VAASKSHPSWLSPCSPTFP 587
           V +  SH +W+ P S T P
Sbjct: 539 VGSGLSHGNWIYPASMTIP 557


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 276 STLCNIST*FCFDSGPR 326
           ST C+  T  CF  GPR
Sbjct: 289 STTCSGHTVRCFTGGPR 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,567
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)