Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0287
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    34   0.11 
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    28   6.9  
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si...    28   6.9  
At3g24150.1 68416.m03032 expressed protein                             27   9.2  

>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -1

Query: 512 DQQLKSSCFANEFTTGPE*RPAEKSGEKLSGLMF---RLGGTITCLLRIRMPF*HQTYNT 342
           D++++ +   +E +TG E  P E   EK  G+MF   +  G  T  L +R    + +Y+T
Sbjct: 316 DEEVEENDDIDEASTGAELEPGEFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDT 375

Query: 341 FYSYSSRTRIETKSRAYI 288
           +  YS     + K + Y+
Sbjct: 376 WEPYSGLGNCKEKLKEYV 393


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
            contains Pfam PF02138: Beige/BEACH domain; similar to LBA
            isoform gamma (GI:10257405) [Mus musculus]; similar to
            beige-like protein (CDC4L) - Homo sapiens; similar to
            Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
            protein homolog implicated in neuronal membrane traffic
            (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -3

Query: 381  QNPNAILTSDIQYILQLLISDQNRNKI---TCLYYT 283
            Q+P+A+L S +  +L + ISD  R ++   TC+ Y+
Sbjct: 1201 QSPSALLWSVLSPVLNMPISDSKRQRVLVTTCVLYS 1236


>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
           similar to GP|2435515|AF024504; contains Pfam profile
           PF03107: DC1 domain
          Length = 247

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = -2

Query: 523 LPRETNNSRVAASRMNLLPVRNSDPLRSPARNSAG*CLG*VGQ*RVFSESECHFDIRHTI 344
           LPRETN+       + LL   +S P        A  C G  G    ++ SEC +D+    
Sbjct: 64  LPRETNHKSHPNHSLTLL---HSPPYGQSYTCDA--C-GEYGSGFTYNCSECQYDVHVGC 117

Query: 343 HFTATHLGPESKQNHVLILHNVLCK 269
            F    +  E  ++ + +L+N  CK
Sbjct: 118 AFIPETVEREDHEHPLTLLYNTPCK 142


>At3g24150.1 68416.m03032 expressed protein
          Length = 343

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
 Frame = -1

Query: 608 KPFLVSPGKGGRARAQPGGVGFTSSYPSASKGDQQLKSSCFANEFTTGP-------E*RP 450
           KP  +  G G  +   P  V   S YP   +G+ Q + +  +      P         +P
Sbjct: 205 KPLAIRQGTGPASAPAPAPVNLGSVYPLYYEGNNQTQQADMSFRVPEAPIIIGMPIGIKP 264

Query: 449 AEKSGEKLSGLMFRLG 402
           +E++ E++  L  RLG
Sbjct: 265 SEEATERVCDLSLRLG 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,093
Number of Sequences: 28952
Number of extensions: 292570
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)