Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0286
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   7.4  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 297 GVILVSINVYEKLTELSLSDVLIRCF 374
           G++LVSIN Y+ L E   +D LI+ F
Sbjct: 99  GIVLVSINPYQNLPEF-YNDNLIKHF 123


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 601 SCLRIHIDKLNIFVVANITW 542
           S +RI ID LNI++ A  TW
Sbjct: 263 STVRIKIDALNIYIEACKTW 282


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 514 NFFVLQ*IKSK*YLLPQKYLTYQCGYVSTNKFRITNS 624
           N+F  + +K+   LL  + L Y C ++   +F++ ++
Sbjct: 168 NYFEDESLKNNNLLLASRQLGYHCSFIPVGEFQVRDA 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,303
Number of Sequences: 5004
Number of extensions: 54424
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)