Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0286
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    31   0.82 
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    29   4.4  
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     28   5.8  
03_01_0080 - 640806-641146,642484-642700,642795-642952,644057-64...    28   5.8  
07_03_0460 + 18425464-18427473                                         28   7.6  
07_03_0081 - 13203140-13203822,13204979-13205045                       28   7.6  

>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -1

Query: 569 YFCGSKYHLDLIYCKTKKFVPFNDIYSRQNVIINMFYFCELTSASDLNTRQRNVTSI 399
           +  GSK ++D +YC+T +  P  D+YS   V++ +     +T    ++ + RN+  +
Sbjct: 235 FVIGSKGYMDPVYCETGRLSPKCDVYSFGVVLLEL-----ITRKKGIDDQSRNLAGM 286


>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 575 VKYFCGSKYHLDLIYCKTKKFVPFNDIYSRQNVIINM 465
           +K  CG   ++D ++ +T+ F   +D+YS   V++ +
Sbjct: 582 IKLVCGDLDYIDPVFLQTRNFTVKSDVYSYGVVLLEL 618


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 557 SKYHLDLIYCKTKKFVPF---NDIYSRQNVIIN 468
           +K H   I C+T   +P    ND+Y R NVI+N
Sbjct: 96  AKLHFLKIQCETFSMLPHESVNDMYGRLNVIVN 128


>03_01_0080 -
           640806-641146,642484-642700,642795-642952,644057-645062
          Length = 573

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
 Frame = +3

Query: 153 PTLQTETHYCFTAEISGVVV-----PTRADSQE-VLPPAIVWTTF----LPN*LPLACGV 302
           P+L   +     A+ SG+++     P  ADS+  VL  A+   +F     P     A G+
Sbjct: 47  PSLGLASGSVLAADPSGILLLSSSDPFLADSKSYVLWDAVYKISFPVPATPTETGAATGL 106

Query: 303 ILV---SINVYEKLTELSL--SDVLIRCFSS 380
           ++V   S ++Y  + ELS+  SDV++RCFS+
Sbjct: 107 VVVPGGSDHIYIMVAELSIRGSDVILRCFST 137


>07_03_0460 + 18425464-18427473
          Length = 669

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 569 YFCGSKYHLDLIYCKTKKFVPFNDIYSRQNVIINMF 462
           +  GSK ++D ++C+T +     D+YS   V++ +F
Sbjct: 248 FVIGSKGYVDPVFCQTGRLSQKCDVYSFWVVLLELF 283


>07_03_0081 - 13203140-13203822,13204979-13205045
          Length = 249

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 289 SGN*LGKKVVQTIAGGRTSCESARVGT 209
           SGN   +++  T A GR SCES   GT
Sbjct: 75  SGNIWARRLCSTDASGRFSCESGDCGT 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,216
Number of Sequences: 37544
Number of extensions: 349981
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)