Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0286
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical ...    27   9.0  
AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical ...    27   9.0  
AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical
          protein C05C8.1b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 40 HSPPGVKWLLESIDIYDV 93
          H+ PG++W+LE  + YDV
Sbjct: 17 HNIPGLRWVLEGFNNYDV 34


>AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical
          protein C05C8.1a protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 40 HSPPGVKWLLESIDIYDV 93
          H+ PG++W+LE  + YDV
Sbjct: 17 HNIPGLRWVLEGFNNYDV 34


>AC006794-2|AAK68505.2|  622|Caenorhabditis elegans Hypothetical
           protein Y50D4A.4 protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 204 VVVPTRADSQEVLPPAIV---WTTFLPN*LPLACGVILVSINVYEKLTELSLSD 356
           VV    +  Q   PPA+    W TFLP+ +  + G ++ SI +  +  +L ++D
Sbjct: 263 VVTTIESHPQHQPPPALYTNFWFTFLPDIVIDSSGGVMYSIRLKNEHAQLEIAD 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,145,944
Number of Sequences: 27780
Number of extensions: 310694
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)