Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0286
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24420.1 68414.m03077 transferase family protein similar to d...    29   2.1  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   4.8  
At5g26940.4 68418.m03215 exonuclease family protein contains exo...    27   8.4  
At5g26940.3 68418.m03214 exonuclease family protein contains exo...    27   8.4  
At5g26940.2 68418.m03213 exonuclease family protein contains exo...    27   8.4  
At5g26940.1 68418.m03212 exonuclease family protein contains exo...    27   8.4  

>At1g24420.1 68414.m03077 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034],
           acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
           concinna][GI:6166330][PMID:10588064]
          Length = 436

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +3

Query: 159 LQTETHYCFTAEISGVVVPTRADSQEVLPPAIVWTTFLPN*LPLACGVILVSINVYEKLT 338
           L +E   C   E   +++P  A S+E    A+ W   L      +CG ++++I V  K+T
Sbjct: 105 LLSEFLKCPVPESLELLIPVEAKSRE----AVTWPVLLIQANFFSCGGLVITICVSHKIT 160

Query: 339 ELSLSDVLIRCFSSS 383
           + +   + IR ++ S
Sbjct: 161 DATSLAMFIRGWAES 175


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 140 LQRLPHPSNRNALLLHGRNKRGSGTYPRGLTRGP 241
           L  L HP  R  LL  GR  RG+ ++  G+ + P
Sbjct: 324 LLELLHPGQRALLLPGGRGGRGNASFKSGMNKVP 357


>At5g26940.4 68418.m03215 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
 Frame = +3

Query: 303 ILVSINVYEKLT---ELSLSDVLIRCFSSS 383
           +L+   V++KLT   +LSLSD+++RC ++S
Sbjct: 275 VLLLSKVFQKLTIDLKLSLSDLVLRCHTAS 304


>At5g26940.3 68418.m03214 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
 Frame = +3

Query: 303 ILVSINVYEKLT---ELSLSDVLIRCFSSS 383
           +L+   V++KLT   +LSLSD+++RC ++S
Sbjct: 275 VLLLSKVFQKLTIDLKLSLSDLVLRCHTAS 304


>At5g26940.2 68418.m03213 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
 Frame = +3

Query: 303 ILVSINVYEKLT---ELSLSDVLIRCFSSS 383
           +L+   V++KLT   +LSLSD+++RC ++S
Sbjct: 275 VLLLSKVFQKLTIDLKLSLSDLVLRCHTAS 304


>At5g26940.1 68418.m03212 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
 Frame = +3

Query: 303 ILVSINVYEKLT---ELSLSDVLIRCFSSS 383
           +L+   V++KLT   +LSLSD+++RC ++S
Sbjct: 275 VLLLSKVFQKLTIDLKLSLSDLVLRCHTAS 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,420
Number of Sequences: 28952
Number of extensions: 284482
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)