Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0281
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    25   0.37 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   1.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   4.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.9  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 195 RLF*GVVSCQKLGEVKDLGPSLLPFFLSGGAGVRHNPVRYP 73
           R + G + C+ +   + LGP L  + L   A  RH  + YP
Sbjct: 105 RFYGGFLLCKVVKYGQTLGPYLSSYVLMATAIDRHQAICYP 145


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 228 TKPHRAPPHDYTKLTVPRC 284
           T P+RAP  D T+  +P C
Sbjct: 154 TDPNRAPDCDPTQCVLPDC 172


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 427 PTVECRAPPHPGLDSPYEG 483
           P  + + P + GLD PY+G
Sbjct: 201 PVTQTQLPLNLGLDFPYQG 219


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 183 GVVSCQKLGEVKDLGPSL-LPFFLSGGAGVRHNPVRYPPQPGIRKWIP 43
           GVVS +   + +  G ++ +P    GG  V+ +P    P  G+R+ IP
Sbjct: 17  GVVSAEHPHQHQHYGAAVQVP---QGGGAVQPDPGSCDPSVGLRQGIP 61


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 234 PHRAPPHDYTKLTVPRC 284
           P+RAPP D     +P C
Sbjct: 157 PNRAPPCDPAVCVLPDC 173


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 285 APKVSP*AVPVLMLRRDFIPGKIP 356
           AP VSP ++P +     F+P  +P
Sbjct: 193 APSVSPASLPSISPSGGFLPKWLP 216


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 418 TTGPTVECRAPPHPGLD 468
           TTG  VEC A  +P  D
Sbjct: 38  TTGAVVECSAHGNPTPD 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,448
Number of Sequences: 336
Number of extensions: 2767
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)