Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0281
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    32   0.040
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    29   0.38 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.50 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   0.87 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   2.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   3.5  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   6.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   8.1  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   8.1  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 32.3 bits (70), Expect = 0.040
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 122 SSSQEAPESDITRFVTPLNRVSVNGFPSVKKKKRIRGPP 6
           +++ E P+S+   F+ P N  S+    +VKK  R+  PP
Sbjct: 258 NNTSEKPDSNNCGFLLPSNSTSIKDLKNVKKGNRLNSPP 296


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 KGARSTCPAERLPTKPHRAPPHDYTKLTVPRCAP 290
           +  RS    +R    PHR+P H+Y KL V  C+P
Sbjct: 89  RNQRSLKQVKRTVLLPHRSPIHEYLKLIV--CSP 120


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +3

Query: 147 PSPPPISDRRLRLKKGARSTCPAERLPTKPHRAPPHDYTKL--TVPRC--APKVSP*AVP 314
           P P P S + LRL    RS  P+ R   +P R+P   +  +  T+P     PK +P   P
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPR-SGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFP 387

Query: 315 VLMLRRDFIP 344
               R   IP
Sbjct: 388 RRFERDPTIP 397


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 125 PSSSQEAPESDITRFVTPLNRVSVNGFPSVKKKKRIRGPP 6
           PS++   P S+  + +TP   VS++ +   KK+KR   PP
Sbjct: 284 PSANVYQPASNANQVITP---VSISDYRPPKKRKRAAWPP 320


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 278 AMRAESLALGGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQS 436
           A + + +  GG   N+ +   P      P +  +T      PP    PP +QS
Sbjct: 45  ASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYTRLTYSVPPLPIPPPSEQS 97


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 110 PERKKGRREGPRSFTSPNF 166
           P +KKG  +GP SF +P +
Sbjct: 45  PVKKKGSAKGPPSFVTPEY 63


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 154 LPQFLTGDYALKKAREALAPQNDYRLNPIELHHTTT 261
           +P+F+  D    +AR  L+     RLNP E H+TT+
Sbjct: 697 IPRFIVCDQGGSQARFLLS-----RLNPSETHNTTS 727


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 172 GDYALKKAREALAPQNDYRLNPIELHHTTTRNLRYRDARRKSRLRRY 312
           G Y  ++ R     ++D+R       H  +R   YR+  R  R RRY
Sbjct: 42  GHYGSERPRRRRRDESDFR------RHRESRERSYREDERPRRERRY 82


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 311 TRTNVKTGFHPRENPVEPRLGRH 379
           TR+N + G H R  P    L RH
Sbjct: 143 TRSNHRHGSHRRHEPYRTHLSRH 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,169
Number of Sequences: 5004
Number of extensions: 41394
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)