Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0281
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 37 0.009
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 37 0.009
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.45
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.45
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.45
AL117207-22|CAO82073.1| 505|Caenorhabditis elegans Hypothetical... 30 0.78
Z69383-11|CAM06588.1| 110|Caenorhabditis elegans Hypothetical p... 29 2.4
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 28 3.2
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 28 3.2
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.2
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 5.5
AJ561221-1|CAD99221.1| 302|Caenorhabditis elegans NAS-33 protei... 27 5.5
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 27 7.3
Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical pr... 27 9.7
AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical... 27 9.7
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 278 AMRAESLALGGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRT 457
A A A G +R+ K P+E P+E TV+GA P T + +Q + P
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNAPVDEPMD 1472
Query: 458 RD 463
D
Sbjct: 1473 TD 1474
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 278 AMRAESLALGGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRT 457
A A A G +R+ K P+E P+E TV+GA P T + +Q + P
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNAPVDEPMD 1472
Query: 458 RD 463
D
Sbjct: 1473 TD 1474
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.45
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2
Query: 305 GGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRTRDLIVPTRA 484
GG R + + RE P PR T S P TG PP G P T +P+R
Sbjct: 388 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG---LPSRQ 444
Query: 485 ER 490
+R
Sbjct: 445 KR 446
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.45
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2
Query: 305 GGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRTRDLIVPTRA 484
GG R + + RE P PR T S P TG PP G P T +P+R
Sbjct: 409 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG---LPSRQ 465
Query: 485 ER 490
+R
Sbjct: 466 KR 467
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 0.45
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2
Query: 305 GGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRTRDLIVPTRA 484
GG R + + RE P PR T S P TG PP G P T +P+R
Sbjct: 394 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG---LPSRQ 450
Query: 485 ER 490
+R
Sbjct: 451 KR 452
>AL117207-22|CAO82073.1| 505|Caenorhabditis elegans Hypothetical
protein Y60A3A.27 protein.
Length = 505
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 165 KLGEVKDLGPSLLPFFLSGGAGVRHN 88
+LG KD G LLPFFL G A R++
Sbjct: 56 RLGIPKDTGTRLLPFFLDGVAKTRYD 81
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 165 KLGEVKDLGPSLLPFFLSGGAGVRHN 88
+LG KD G LLPFFL G A R++
Sbjct: 444 RLGIPKDTGTRLLPFFLDGVAKTRYD 469
>Z69383-11|CAM06588.1| 110|Caenorhabditis elegans Hypothetical
protein F13E9.15 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 344 RENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAG 445
++N + P+ G SG +PP G P QQ+ +G
Sbjct: 27 QQNGLGPQGGTTAASGQPQPPQPGQPGGQQTGSG 60
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 180 VVSCQKLGEVKDLGPSLLPFFLSGGAGVRHNPVRYPPQP 64
+VS Q V D SL+ +L+GG +P PP+P
Sbjct: 719 IVSGQAAKAVVDGVNSLVSSYLTGGTNAAQSPANAPPRP 757
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 180 VVSCQKLGEVKDLGPSLLPFFLSGGAGVRHNPVRYPPQP 64
+VS Q V D SL+ +L+GG +P PP+P
Sbjct: 719 IVSGQAAKAVVDGVNSLVSSYLTGGTNAAQSPANAPPRP 757
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 284 RAESLALGGTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRT 457
R+ L+ G+RT + E+ R GRH+ S ++ PP P + S R RT
Sbjct: 315 RSRHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRSRSRSPP-RKRPVRRSRSRSRSRT 371
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical protein
C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 147 PSPPPISDRRLRLKKGARSTCPAERLPTKPHRAPPHD---YTKLTVPRCAPKVS 299
P PPP+ + K A ST +P +APP + K T+P PKVS
Sbjct: 877 PLPPPLPKEK---PKTASSTSLRRNESIRPEQAPPPPPPAHAKPTLPTKQPKVS 927
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 181 ALKKAREALAPQNDYRLNPIELHHTTTRNLRY---RDARRKSRLRRYP 315
ALKK R+ LA + + R E+ LRY ++ R + R +R P
Sbjct: 617 ALKKTRQELAKEEEDRKKEAEVAQRVRDELRYIETQERRERERAKRNP 664
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical protein
C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 147 PSPPPISDRRLRLKKGARSTCPAERLPTKPHRAPPHD---YTKLTVPRCAPKVS 299
P PPP+ + K A ST +P +APP + K T+P PKVS
Sbjct: 877 PLPPPLPKEK---PKTASSTSLRRNESIRPEQAPPPPPPAHAKPTLPTKQPKVS 927
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 101 ESDITRFVTPLNRVSVNGFPSVKKKKRIRG 12
ESD+ V+ +N+V+ NGF VK+K + G
Sbjct: 171 ESDMALTVSQMNKVAQNGF-RVKRKMNLNG 199
>AJ561221-1|CAD99221.1| 302|Caenorhabditis elegans NAS-33 protein
protein.
Length = 302
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 101 ESDITRFVTPLNRVSVNGFPSVKKKKRIRG 12
ESD+ V+ +N+V+ NGF VK+K + G
Sbjct: 25 ESDMALTVSQMNKVAQNGF-RVKRKMNLNG 53
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 207 CPAERLPTKPHRAPPHDYTKLTVPRCAPKVSP*AVPVLMLRRDFIPGKIP 356
CPA+ P P PP P P P + P +M R F P +P
Sbjct: 60 CPAQFCPPPPICPPPPPPPMPCPPPPPPMPRP-SCPCMMQRPSFYPSYVP 108
>Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical
protein F59F3.2 protein.
Length = 430
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 308 GTRTNVKTGFHPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAG 445
G N T HP +N + G + V PPC PP + G
Sbjct: 124 GDDGNSPTDGHPGDNGKDGTDGIYQVDEPDCPPCPQGPPGEDGLRG 169
>AC006708-22|AAF60420.2| 335|Caenorhabditis elegans Hypothetical
protein Y110A7A.2 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 341 PRENPVEPRLGRHTVSGAQEPPCTGSPPDQQSSAGRPRT 457
PR V+P G + A PP P + RPRT
Sbjct: 16 PRPIMVQPMGGMKPIKSASNPPTPLDSPFMAGAINRPRT 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,336,517
Number of Sequences: 27780
Number of extensions: 277118
Number of successful extensions: 904
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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