Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0281
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   1.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.3  

>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 379 VSPETRFYGIFPGMKSRLN 323
           ++PE  F+G+ PG  S  N
Sbjct: 60  INPEYGFFGVAPGTSSATN 78


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 349 KSRRTSSRATHRERRTGATLHRFTTGPTVECRAPPHPGLDS 471
           K R  +      +++T   L +  T P +  R   HP +DS
Sbjct: 506 KLRLETKELFSSQQKTKNNLMKLETTPVLPSRFQSHPSIDS 546


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 108 GAGVRHNPVRYPP 70
           G G  H+P ++PP
Sbjct: 397 GTGREHDPAKFPP 409


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 368  LGRHTVSGAQEPPCTGSP 421
            +GR +V  A+  P +GSP
Sbjct: 1840 VGRRSVGSARNIPVSGSP 1857


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 361 TSSRATHRERRTGATLHRFTT 423
           TSS      R T A LH FTT
Sbjct: 414 TSSPKPFPRRATLAQLHNFTT 434


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 474 GTIKSRVRGRPALDCWSGGEPVQGGS 397
           G  KS +  +  L CW+     +GG+
Sbjct: 245 GRAKSEILYKSTLHCWATIYKTEGGN 270


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 474 GTIKSRVRGRPALDCWSGGEPVQGGS 397
           G  KS +  +  L CW+     +GG+
Sbjct: 245 GRAKSEILYKSTLHCWATIYKTEGGN 270


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 90  NPVRYPPQPGIRKWIP 43
           N + Y P  GI  W+P
Sbjct: 329 NWMTYMPPSGIPNWVP 344


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 90  NPVRYPPQPGIRKWIP 43
           N + Y P  GI  W+P
Sbjct: 329 NWMTYMPPSGIPNWVP 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,383
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)