Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0281
(490 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 31 0.42
At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family... 29 1.3
At3g03930.1 68416.m00409 protein kinase-related similar to serin... 29 2.2
At3g56720.1 68416.m06309 expressed protein 28 3.9
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ... 28 3.9
At3g46780.1 68416.m05078 expressed protein 27 5.1
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 27 6.8
At3g19780.1 68416.m02504 expressed protein 27 6.8
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 27 9.0
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 27 9.0
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 27 9.0
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 27 9.0
At1g30280.1 68414.m03703 expressed protein contains low similari... 27 9.0
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 31.1 bits (67), Expect = 0.42
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 277 RDARRKSRLRRYPY*C*DGISSPGKSRRTSSRATHRERRTGA-TLHR 414
+D+ R+ +LRR+ C DG SP + + R ++ERR TLHR
Sbjct: 492 QDSTREDKLRRHAENCHDGDDSPSRD-GSLEREMYKERRYAKDTLHR 537
>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 175
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 359 EPRLGRHTVSGAQEPPCTG-SPPDQQSSAGRPRTRDLIVPT 478
+PRL R++ G PP SPP S + PR+R VPT
Sbjct: 53 KPRLQRYSPYGNPPPPSPQYSPPPPPSQSSPPRSRCPPVPT 93
>At3g03930.1 68416.m00409 protein kinase-related similar to
serine/threonine protein kinase [Chlamydomonas
reinhardtii] GI:18139937
Length = 287
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = -1
Query: 250 GGARWGLVGSRSAG---QVLRAPFLRRS 176
GG+RWG+V SR++G QV+ FL S
Sbjct: 189 GGSRWGVVMSRNSGFSEQVMEVDFLNPS 216
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 340 SPGKSRRTSSRATHRERRTGATLHRFTTGPTVE 438
S GK T R TH ++ G +FTTG T E
Sbjct: 223 SDGKCLATEDRDTHSKKLKGFISDKFTTGNTNE 255
>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 720
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 320 NVKTGFHPRENPVEPRLGRH-TVSGAQEPPCTGSPPDQQSSAGRPRTRDLIVPTRAER 490
NV P E PV + +V + P SPPD Q S + DL+ ER
Sbjct: 58 NVPQNHEPDEAPVVNVVSEDISVDNSSLPVSVDSPPDDQMSEDKKVVTDLVEELEKER 115
>At3g46780.1 68416.m05078 expressed protein
Length = 510
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = -1
Query: 382 GVSPETRFYGIFPGMKSRLNISTGTA*GETFGAHRGTVSFV*SCGGARWGLVGSRSAGQV 203
G +P +G P MKS + + T + G FG +R GA G G R A +
Sbjct: 53 GKNPFQFDFGKLPDMKSLIPVVTNPSTGLVFGNNRKKDPGTIFVAGAT-GQAGIRIAQTL 111
Query: 202 LRAPFLRRSLLSEIGGGE 149
L+ F R+ + ++G +
Sbjct: 112 LQRGFSVRAGVPDLGAAQ 129
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.1 bits (57), Expect = 6.8
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 153 PPPISDRRLRLKKGARSTCPAERLPTKPHRAPPHDYTKLTVPRCAP-KVSP*AVPV 317
PPP+ + K P + P K PP KL C P KV P VPV
Sbjct: 256 PPPVPVYKPPPKIEKPPPVPVYKPPPKIEHPPPVPVHKLPKKPCPPKKVDPPPVPV 311
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 257 LHETYGTAMRAESLALGGTRTNVKTGFHPRENPVEPRLGRHTVSGAQE 400
LHE Y + +++ GG+R N ++ R N V P G +V+ E
Sbjct: 726 LHEVYRSLKEYKAIIQGGSRNNQRSELAER-NKVTPYEGESSVTDITE 772
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 338 HPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQ 433
H + P PR G G PP G PP Q
Sbjct: 224 HGMQGPPPPRPGMPPAPGGFAPPRPGMPPHNQ 255
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 338 HPRENPVEPRLGRHTVSGAQEPPCTGSPPDQQ 433
H + P PR G G PP G PP Q
Sbjct: 224 HGMQGPPPPRPGMPPAPGGFAPPRPGMPPHNQ 255
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 214 QNDYRLNPIELHHTTTRNLRYRDAR 288
+NDYR+NP E H T +L R R
Sbjct: 587 KNDYRINPNEKHFTCLVDLLGRTGR 611
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 396 RSHLAPVHHRTNSRVPGAPAPGT 464
R HLA V+ R+ RVP +PGT
Sbjct: 183 REHLAKVYPRSADRVPINSSPGT 205
>At1g30280.1 68414.m03703 expressed protein contains low similarity
to cyclin G-associated kinase GI:1902912 SP|P97874 from
[Rattus norvegicus]
Length = 455
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +2
Query: 305 GGTRTNVKTGFHPRENPVEPRLGRHTVSGAQE------PPCTGSPPDQQSSAGRPRTRDL 466
GG + K G + + +PR ++ ++E PP S D S+ R R L
Sbjct: 104 GGRGGSAKEGSKKQSSMTKPRSNSSSMLSSEEASPHYPPPAAASGDDSGFSSFTSRLRPL 163
Query: 467 IVPTRAER 490
VP+R+ +
Sbjct: 164 NVPSRSHK 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,851,105
Number of Sequences: 28952
Number of extensions: 257552
Number of successful extensions: 845
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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