Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0280
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0350 + 16899076-16900164 31 0.64
06_03_0428 + 20692616-20692629,20692895-20693717 30 1.5
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 2.6
11_01_0482 - 3714442-3715593 29 3.4
10_08_0359 - 17167829-17169595,17169976-17169996 29 3.4
01_06_0015 + 25586433-25586571,25586684-25587231 29 3.4
07_03_0494 - 18753069-18754214 28 5.9
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 28 5.9
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743... 28 5.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 5.9
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 5.9
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 28 7.8
>09_04_0350 + 16899076-16900164
Length = 362
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/69 (33%), Positives = 30/69 (43%)
Frame = +2
Query: 398 RPISSS*RCTDLTSAPALGTAPQEFCCWSELQAAASTGRIPWRQGQGVLPWRSVRTRRTN 577
RP S++ R + A G+ P + C S AA R PW G WR RR +
Sbjct: 36 RPASATRRVAAGSDVSAAGSEP--WWCGSTADAATPMARRPWLVSSGAEAWR----RRGD 89
Query: 578 LPEAATAEA 604
AA+A A
Sbjct: 90 AASAASATA 98
>06_03_0428 + 20692616-20692629,20692895-20693717
Length = 278
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 554 SATEVHLGLDAMVFAQYSPPPEARTSSRTPEERYRARALM 435
+A + LDA+V A SPPP +P E RA AL+
Sbjct: 143 AARAAAMALDAVVPAPPSPPPPLMPPQASPSEAARAHALV 182
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 316 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 465
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>11_01_0482 - 3714442-3715593
Length = 383
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 406 QFQLTLYGPHISARA-RYRSSGVLLLVRASGGGE 504
+ + T Y PH SA+A + R LLVR GGG+
Sbjct: 154 EVEKTAYRPHQSAKAHQLREGSTGLLVRRGGGGD 187
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = -1
Query: 462 GAVPSAGADVRSVQRQLELMGL*VRPDVSDGH--VRCS*RMDVFEGCSVTVGT---SSQG 298
G V + ++ R L GL VRP SD H VRC + V GC V +S G
Sbjct: 51 GVVETRALTDTTLLRSLAAKGLAVRPGASDEHHTVRCD-AVIVGSGCGGGVAAAVLASAG 109
Query: 297 YRQFVYHNG 271
Y+ V G
Sbjct: 110 YKVVVVEKG 118
>01_06_0015 + 25586433-25586571,25586684-25587231
Length = 228
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 297 SPGSWSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADA 422
SPG W +Q++ HP + S DHH G + + A A
Sbjct: 157 SPGVWDEYMQASSFPHPELVSFAADHHLEMAGVGEVAAAAAA 198
>07_03_0494 - 18753069-18754214
Length = 381
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +2
Query: 452 GTAPQEFCCWSELQAAASTGRIPWRQGQGVLPWR------SVRTRRTNLPEAATAEAR 607
G ++ ++ A +GR W++G G P+ + TRRT P TA AR
Sbjct: 167 GDGAEDSTGYAAADARGKSGRRKWKRGGGAAPFTCCLYLPGLGTRRTAKPSPPTAAAR 224
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 309 WSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADAVRTSHQRPRSVPLLRSS 473
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>06_03_0859 -
25473784-25473798,25473862-25473923,25474251-25474345,
25475718-25475831,25476490-25476695,25476834-25476959,
25479516-25480178
Length = 426
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 411 PADAVRTSHQRPRSVPLLRSSAAGP 485
PA + R+S PR +PLL S A+GP
Sbjct: 58 PASSRRSSGPLPRPLPLLPSPASGP 82
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 358 ASNMTITNVRSDLETHQFQLTLYGPHISARARYRSSGVLLLVRASGGGEYWAN--TMASR 531
+S + T ++ E H + LY PH+SA G L + GG E+ ++ T+A R
Sbjct: 543 SSGVATTAAVAEQEVHSRFVKLYPPHLSAPGGGEMHGSELHLPMGGGAEWQSHQQTLAWR 602
Query: 532 PRC 540
RC
Sbjct: 603 -RC 604
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 304 GAGPDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYG 429
GAG T A+ S+ + N R D+ T+ +QL YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 440 APALGTAPQEFCCWSELQAAASTGRIPWRQGQG 538
A A TA Q FC + AA+ R WR G G
Sbjct: 110 AAARATAYQHFCAGETAEEAAAAVRRLWRGGMG 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,043
Number of Sequences: 37544
Number of extensions: 387030
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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