Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0280
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)                 29   3.4  
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                28   7.9  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = +1

Query: 250 DGIEEAEPIVIDELSIALGAGPDGYRATFKDIHA-SGASNMTITNVRSDLETHQFQLTLY 426
           D I+    IV+DE+  A G G  G   + +DI + + A         SD E   + LT+ 
Sbjct: 189 DAIDMEFSIVMDEVQFAFGVGLQGKEISMEDIRSLTTAIFWEYPGKLSDTENQHYFLTML 248

Query: 427 GPHISARA-RYRSSGVLLLVRASGGGEYWANTMASRPRCTSVAL 555
               S R   Y+S  +L  VR S   + +A  + +    T V++
Sbjct: 249 ICLCSGRQDNYKS--LLSNVRCSTNNKQFAQLVLATRSFTIVSI 290


>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 853

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 390 GPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPS 488
           GP DP+VP+D    S     S P   S   GPS
Sbjct: 117 GPSDPTVPSDPTGQSDPTAPSDPTAPSDPTGPS 149



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 390 GPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPS 488
           GP DP+ P+D    S     S P + S   GPS
Sbjct: 519 GPSDPTAPSDPTGPSDPTAPSDPTVSSDPTGPS 551



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 390 GPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPS 488
           GP DP+ P+D    S     S P + S   GPS
Sbjct: 261 GPSDPTAPSDPTAPSDPTGPSDPTVPSDPTGPS 293



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 393 PRDPSVPADAVRTSHQRPRSVPLLRSSAAGPS 488
           P DP+VP+D    S    RS P + S    PS
Sbjct: 460 PSDPTVPSDPTGQSDPTGRSDPTVHSDPTAPS 491


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 381 RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFR 494
           R+V    PSVP+    T H +PR V L+     G   R
Sbjct: 421 RRVPLTSPSVPSGTTSTDHSQPRRVQLVTMPVPGQMVR 458


>SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 279 DRRTVYSPGSWSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADA 422
           D  T Y   + ++RL++ +Q  P    +  +H     GPR P++P DA
Sbjct: 22  DALTTYIITNANKRLETKVQILPLTYGLPDEHD----GPRIPTIPGDA 65


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 152 ICLHSFSAVSLSRSKTTPRIYAFL-FF*PIKI*KQKGRAMFFFFFNSR 12
           IC   FSA  L RS +TP I A L +  P+         +FFFF++ R
Sbjct: 101 ICTLLFSAFRLERSPSTPPITAPLSYLPPMSPSVGVLITLFFFFYSDR 148


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 426  RTSHQRPRSVPLLRSSAAGPSFRRRRVLGEYHGVKAKVYFRGAPYERDGR 575
            R S   P+  P  RS +A P  R  R        K +V  RG+P   +GR
Sbjct: 1089 RRSPSPPKREPRRRSPSASPPRREARKRSLSRSPKREVRRRGSPSPSEGR 1138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,377,599
Number of Sequences: 59808
Number of extensions: 406896
Number of successful extensions: 1143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)