Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0280
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U41010-2|AAF98588.1|  585|Caenorhabditis elegans Trehalase prote...    27   9.2  
AJ512334-1|CAD54508.2|  585|Caenorhabditis elegans trehalase pro...    27   9.2  
AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 411 PADAVRTSHQRPRSVPLLRSSAAGPSFRRRRVL 509
           P      +  RPR  P  R    GP FRRR V+
Sbjct: 29  PTSCATCTSNRPRCTPPRRIRQCGPKFRRRLVV 61


>U41010-2|AAF98588.1|  585|Caenorhabditis elegans Trehalase protein
           2 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 428 DLTSAPALGTAPQEFCCWSELQAAASTGR 514
           DL SA  L T  ++   W +L AAA +GR
Sbjct: 263 DLESAEHLDTLEKKCVLWGDLAAAAESGR 291


>AJ512334-1|CAD54508.2|  585|Caenorhabditis elegans trehalase
           protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 428 DLTSAPALGTAPQEFCCWSELQAAASTGR 514
           DL SA  L T  ++   W +L AAA +GR
Sbjct: 263 DLESAEHLDTLEKKCVLWGDLAAAAESGR 291


>AC006685-1|AAK84571.1|  154|Caenorhabditis elegans Hypothetical
           protein T13G4.2 protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 408 LMGL*VRPDVSDGHVRCS*RMDVFEGCSVTVGTSSQGYRQFVYHNGLSLFD 256
           L  L  RP +S+   RC  R ++ EG  + +    +G  + VY+  L+  D
Sbjct: 16  LQSLGDRPHISEKTARCRRREELGEGEKLLLQPQKRGIERGVYYRPLNFTD 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,809
Number of Sequences: 27780
Number of extensions: 304741
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)