Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0280
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    37   2e-04
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 268 EPIVIDELSIALGAGPDGYRATFKDIHASGAS-NMTITNVRSDLETHQFQLTLYGPHISA 444
           EP+ +D + I    G    R  +K+I   G + N+ I N   D +        Y P +  
Sbjct: 68  EPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDF 127

Query: 445 RARYRSSGVLLLVRASGGGE 504
            A Y+  G +LL+   G G+
Sbjct: 128 VADYKIEGKVLLLPVRGAGK 147


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 273 GLSLFDAISGAPPF 232
           G+ +F+ ++G PPF
Sbjct: 552 GVLMFELLTGTPPF 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,046
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)