Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0280
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13980.1 68416.m01765 expressed protein                             31   0.70 
At1g19370.1 68414.m02410 expressed protein                             29   2.8  
At5g38920.1 68418.m04707 hypothetical protein                          27   8.7  
At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate synth...    27   8.7  

>At3g13980.1 68416.m01765 expressed protein
          Length = 357

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +3

Query: 306 SWSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADAVRTS--HQRPRSVPLLRSSAA 479
           +W +   S+  R+P   S   D   R +    P  P ++++    H + R+  L      
Sbjct: 4   TWEKPKSSSHHRNPSFSSTLLDQIYRSIDDSSPPPPLESIKKKKHHHQQRNASLHEDREI 63

Query: 480 GPSFRRRRVLGEYHGVKAKVYF 545
            P + RR +  ++   + K  F
Sbjct: 64  SPIYHRRSIAADFERSRRKTDF 85


>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +3

Query: 390 GPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFRRRRVLGEYHGVKAKVYFRGAPYERD 569
           GP DP  P  A  +S + P      R +      RRR   G Y  V A      AP + +
Sbjct: 505 GPDDPFTPTGAQNSSAKEPTFTEPSRRNDDLMDLRRRYAGGSYRSVGANDPSSRAPVDGN 564

Query: 570 GRT 578
            RT
Sbjct: 565 YRT 567


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 419 VSWN*WVSRSDLTLVMVMFDAPDAWMSLKVA 327
           + W  W +R+DL      FDAPD  + ++ A
Sbjct: 24  ILWRLWKNRNDLVFKGKQFDAPDMELGMQNA 54


>At4g26200.1 68417.m03772 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthase from Malus x domestica, GI:1658062
           [U73816], Pyrus pyrifolia GI:4586411
          Length = 447

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 384 QVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGPSFRRRRVLGEYHGVK 530
           Q+G  +  V  D + T  ++      +  S   P FR   +  +YHG+K
Sbjct: 56  QMGLAENQVSFDLLETYLEKKNPEGSMWGSKGAPGFRENALFQDYHGLK 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,753
Number of Sequences: 28952
Number of extensions: 287355
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)