Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HPJ3 Cluster: Mariner transposase; n=7; Neoptera|Rep:...   109   5e-23
UniRef50_Q0QXC1 Cluster: Transposase; n=3; Heliothis|Rep: Transp...    46   6e-04
UniRef50_Q13539 Cluster: Mariner transposase; n=2; Homo/Pan/Gori...    46   8e-04
UniRef50_A6GV69 Cluster: Transposase; n=4; Pachygrapsus marmorat...    41   0.032
UniRef50_Q869A8 Cluster: Transposase; n=1; Meloidogyne chitwoodi...    38   0.29 
UniRef50_Q86HI7 Cluster: Putative uncharacterized protein; n=4; ...    36   0.68 
UniRef50_Q8II70 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_UPI00006CB782 Cluster: hypothetical protein TTHERM_0034...    34   2.7  
UniRef50_Q61WC6 Cluster: Putative uncharacterized protein CBG044...    34   2.7  
UniRef50_Q5QT23 Cluster: Transposase; n=5; Eumalacostraca|Rep: T...    34   3.6  
UniRef50_Q0W923 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_Q1HPJ3 Cluster: Mariner transposase; n=7; Neoptera|Rep:
           Mariner transposase - Bombyx mori (Silk moth)
          Length = 350

 Score =  109 bits (263), Expect = 5e-23
 Identities = 51/70 (72%), Positives = 52/70 (74%)
 Frame = -2

Query: 580 PRLKP**FLYFP*NKE*IS*TEIFSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCF 401
           P L P  F  FP  K  +      SPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKC 
Sbjct: 281 PDLSPNDFYTFPKIKNKLRGQRFSSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCV 340

Query: 400 KFRGEYLEKQ 371
           KFRGEY EKQ
Sbjct: 341 KFRGEYFEKQ 350



 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 29/55 (52%), Positives = 34/55 (61%)
 Frame = -3

Query: 672 HHAHGGSYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRFS 508
           HH +  S+   +TK F       ++     SPDLSPNDFYTFPKIKNK R QRFS
Sbjct: 250 HHDNASSHTAHRTKEFLEQENIELLDHPPYSPDLSPNDFYTFPKIKNKLRGQRFS 304


>UniRef50_Q0QXC1 Cluster: Transposase; n=3; Heliothis|Rep:
           Transposase - Heliothis virescens (Noctuid moth) (Owlet
           moth)
          Length = 354

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 24/69 (34%), Positives = 31/69 (44%)
 Frame = -2

Query: 580 PRLKP**FLYFP*NKE*IS*TEIFSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCF 401
           P L P  F  FP  K+ +   +     E + A+  A  E    +W   FNDWF RM KC 
Sbjct: 285 PDLAPCDFALFPIIKDQLKGRKFQIEVELLSAWDQACSELSEEKWKDIFNDWFLRMTKCI 344

Query: 400 KFRGEYLEK 374
              G Y E+
Sbjct: 345 NCNGNYFER 353



 Score = 37.5 bits (83), Expect = 0.29
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 672 HHAHGGSYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRF 511
           HH +  ++    T  F  +   R++     SPDL+P DF  FP IK++ + ++F
Sbjct: 254 HHDNAPAHRARDTVEFLNSSGVRVLDHPAYSPDLAPCDFALFPIIKDQLKGRKF 307


>UniRef50_Q13539 Cluster: Mariner transposase; n=2; Homo/Pan/Gorilla
           group|Rep: Mariner transposase - Homo sapiens (Human)
          Length = 351

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -3

Query: 672 HHAHGGSYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKL 493
           HH +  ++   QT+   R  +  IIR    SPDL+P+DF+ FP +K   +   FS +  +
Sbjct: 252 HHDNAPAHSSHQTRAILREFRWEIIRHPPYSPDLAPSDFFLFPNLKKSLKGTHFSSVNNV 311



 Score = 36.3 bits (80), Expect = 0.68
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 580 PRLKP**FLYFP*NKE*IS*TEIFSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCF 401
           P L P  F  FP  K+ +  T   S         T +       +    N W+HR++KC 
Sbjct: 283 PDLAPSDFFLFPNLKKSLKGTHFSSVNNVKKTALTWLNSQDPQFFRDGLNGWYHRLQKCL 342

Query: 400 KFRGEYLEK 374
           +  G Y+EK
Sbjct: 343 ELDGAYVEK 351


>UniRef50_A6GV69 Cluster: Transposase; n=4; Pachygrapsus
           marmoratus|Rep: Transposase - Pachygrapsus marmoratus
           (Marbled crab)
          Length = 353

 Score = 40.7 bits (91), Expect = 0.032
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 580 PRLKP**FLYFP*NKE*IS*TEIFSPEEAVDAYKTAILETPTSEWNGCFNDWFHRMEKCF 401
           P L P  F  FP  K  I+  +    ++      + +   P SE+  CF  W  RME+C 
Sbjct: 284 PDLAPCDFWLFPKIKGAIAGKQFHRIQDLARTVNSELRGIPASEYRDCFMKWRKRMERCI 343

Query: 400 KFRGEYLE 377
           +  GEY E
Sbjct: 344 EAGGEYFE 351



 Score = 38.3 bits (85), Expect = 0.17
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -3

Query: 672 HHAHGGSYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKL 493
           HH +   +    T +F   +   ++     SPDL+P DF+ FPKIK     ++F  ++ L
Sbjct: 253 HHDNASPHKARLTVQFLEQQGITLLPHPPYSPDLAPCDFWLFPKIKGAIAGKQFHRIQDL 312


>UniRef50_Q869A8 Cluster: Transposase; n=1; Meloidogyne
           chitwoodi|Rep: Transposase - Meloidogyne chitwoodi
           (Columbia root-knot nematode)
          Length = 340

 Score = 37.5 bits (83), Expect = 0.29
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = -3

Query: 603 IIRPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKRPF 469
           I+  S  SPDL+P+D+Y F  +K+  R ++FS+ +++ T  K  F
Sbjct: 264 ILEHSPYSPDLAPSDYYLFSPLKDFLRGKQFSNEEEICTALKNFF 308


>UniRef50_Q86HI7 Cluster: Putative uncharacterized protein; n=4;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum (Slime mold)
          Length = 1163

 Score = 36.3 bits (80), Expect = 0.68
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +3

Query: 6   LSLLSFTIIFVTAFLASCKSIEIVLHRRDDGLFNRNIVYYDDWWLIICCFFLSF 167
           +S + F +  +T+F    K +  +++     L+ +N +Y+ + +L+I C+FL+F
Sbjct: 508 ISRIHFFVNLLTSFTKQQKELSTIVYTMSRCLYRQNRIYHFEMFLLILCWFLNF 561


>UniRef50_Q8II70 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1846

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 63   SIEIVLHRRDDGLF---NRNIVYYDDWWLIICCFFLSFEDKNADAILKLSSPLDRRFYLF 233
            S EI+ ++ D  +F   N+NI +YDD      C +++F +   + +    S  +  F+LF
Sbjct: 815  SQEIIDNKNDVSIFYKQNKNISFYDDIIYDCSCIYMTFSNSKLEPVYPYIS--NNLFFLF 872

Query: 234  IFYY 245
             +YY
Sbjct: 873  EYYY 876


>UniRef50_UPI00006CB782 Cluster: hypothetical protein
           TTHERM_00348730; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00348730 - Tetrahymena
           thermophila SB210
          Length = 881

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 12/57 (21%)
 Frame = +3

Query: 75  VLHRR---DDGLFNRNIVYYDDWWLII---------CCFFLSFEDKNADAILKLSSP 209
           +LH +   D+  F+  + Y+D W++II         CC F+  +DK+ + + +LS P
Sbjct: 406 ILHEQRAWDELTFSEKLKYFDKWFIIILLGNLCQISCCLFILLQDKHDNLVSRLSEP 462


>UniRef50_Q61WC6 Cluster: Putative uncharacterized protein CBG04471;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG04471 - Caenorhabditis
           briggsae
          Length = 580

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 621 RARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKRPFWRPQLPNGM 442
           +AR H+ +RP  D P + P+D   F        +QR  HL + + P K P  +    + M
Sbjct: 505 KARLHQELRPRKDPPQMHPDDTREF----ESQPQQREVHLHQDFRPRKDPPCQEHHHHNM 560

Query: 441 VASMIGSIV--WKN 406
             S  GSI   W N
Sbjct: 561 SQSHYGSITDSWSN 574


>UniRef50_Q5QT23 Cluster: Transposase; n=5; Eumalacostraca|Rep:
           Transposase - Bythograea thermydron
          Length = 350

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -3

Query: 582 SPDLSPNDFYTFPKIKNKFREQRF 511
           SPDL+PND++ F ++K+  R +RF
Sbjct: 281 SPDLAPNDYFLFRQLKSSLRGRRF 304


>UniRef50_Q0W923 Cluster: Putative uncharacterized protein; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           uncharacterized protein - Uncultured methanogenic
           archaeon RC-I
          Length = 643

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 600 IRPSTDSPDLSPNDFYTFPK-IKNKFREQRFSHLKKLWTPTKRPFWRPQLPN 448
           I+ +TD PDL PN  +   K  KN+  E   + + + +   KR  W  QLP+
Sbjct: 444 IKLATDKPDLHPNVQFEIAKAAKNRGMEDEAAGIIRSFAVRKRHLWDRQLPS 495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,181,225
Number of Sequences: 1657284
Number of extensions: 14574539
Number of successful extensions: 33825
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33807
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)