Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   7.6  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   7.6  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   10.0 
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   10.0 
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   10.0 

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 165 NLKKNSKLSTTNHHN 121
           NLKK+S+  +TNHHN
Sbjct: 272 NLKKSSESGSTNHHN 286


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 454 KLGSPKWPFCRRPQLLQVRKSLFTKFILYFRES-IEIIR 567
           +LG   WP+     LL++ KS     ++   ES IEI++
Sbjct: 503 QLGDKNWPYVALNYLLELEKSPKNNLLISMDESVIEIVQ 541


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 654 SYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQ 517
           S  R + K     +KH+  +PS D   +S  D     K K+K +E+
Sbjct: 67  SVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKSKTKEE 112


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 228 LFIFYYIDGGRTRSPSAVKWLPEPIRGRH*KFRELTK*HNIT 353
           +F+F  +  G  R    + W P  + G    +R+L K ++++
Sbjct: 54  VFVFDEVQSGIKRWTDGIAWSPSRVIGNFLVYRQLCKKNSVS 95


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 484 YKTAILETPTSEWNGCFNDWFHRMEKC---FKFRGEYLE 377
           +K+A  + P  +W     DW+ R   C     ++ +Y+E
Sbjct: 162 WKSAFRDVPDKDWAKTCLDWYFRFINCNWPIFYKKQYME 200


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 8  VTFIFHYYFRHS 43
          VTF+FHYY  H+
Sbjct: 28 VTFLFHYYLYHA 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,802
Number of Sequences: 5004
Number of extensions: 64227
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)