Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0066 + 14657007-14657655,14658319-14658581                       30   1.5  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    30   1.9  
06_01_0180 - 1397432-1399969                                           28   7.8  
03_05_0004 + 19468063-19468443                                         28   7.8  
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121...    28   7.8  

>02_03_0066 + 14657007-14657655,14658319-14658581
          Length = 303

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 186 HPHFCLQNLKKNSKLSTTNHHN 121
           H HFCLQ+L KN K+      N
Sbjct: 210 HSHFCLQSLNKNDKIGDVGGRN 231


>02_03_0390 +
           18448671-18448889,18449567-18449632,18449702-18449761,
           18449864-18449959,18452287-18452447,18452669-18452790,
           18452872-18453239,18453653-18453739,18453835-18453969,
           18454349-18454471,18454771-18454854,18455023-18455187,
           18455310-18455486,18455660-18455773,18455912-18456016,
           18457056-18457174,18457244-18457385,18457461-18457555,
           18457757-18457862,18458125-18458204,18458285-18458461,
           18459828-18459912,18460024-18460104,18460208-18460351,
           18460468-18460563,18460654-18460854,18461462-18461895,
           18462417-18462478,18462622-18462872,18462956-18463030,
           18463110-18463300,18463696-18463867,18463956-18464020,
           18464646-18464778,18464861-18464962,18465047-18465130,
           18465656-18465730,18465818-18465877,18465967-18466223,
           18466560-18466608,18466781-18466941,18467013-18467079,
           18467174-18467299,18467422-18467592,18468566-18468769,
           18469059-18469165,18469608-18469737,18469774-18469959,
           18470704-18470742
          Length = 2202

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 54  SCKSIEIVLHRRDDGLFNRNIVYYDDWWLIICCFFLSFEDKNADAILKLSSPLDRRFYLF 233
           S  S +++LHRR+D L  R  V+   + +      L F D   D ++ +S  +D + YL 
Sbjct: 252 SVSSSDVLLHRRED-LLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMIDGQGYLI 310

Query: 234 I 236
           I
Sbjct: 311 I 311


>06_01_0180 - 1397432-1399969
          Length = 845

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 497 SCGRLQNGHFGDPNFRMEWLLQ*LVPSYGKMFQI-SRRILRKAIN 366
           SC ++ +   G P+F M W ++ + P++G + ++    I+ K++N
Sbjct: 289 SCAKMADAGVGSPSFNMSWKME-VDPAFGYLVRLFFADIVSKSMN 332


>03_05_0004 + 19468063-19468443
          Length = 126

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 624 FRARKHRIIRPSTDSP-DLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKRP 472
           F A K   +RP   S  D +      F   K  F + R  H K   TPT+RP
Sbjct: 46  FTANKAGALRPLNPSIFDPTATSLVPFDLAKINFHDDRSLHDKVATTPTRRP 97


>01_07_0302 -
           42611150-42611812,42611881-42611961,42612064-42612150,
           42612283-42612378,42612479-42612543,42612919-42612975,
           42613066-42613147,42613235-42613327,42613714-42613785,
           42613881-42613985
          Length = 466

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 654 SYPRAQTKRFFRARKHRIIRPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKR 475
           S P   + +   +R+  +     D+PD  P D YT  K K K  +Q+    ++    + R
Sbjct: 259 SKPMEASSKSKNSREENLPINDADTPDDGPTDIYTKKKGKGKHSKQQIKSPEEPAGQSTR 318

Query: 474 P 472
           P
Sbjct: 319 P 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,011,803
Number of Sequences: 37544
Number of extensions: 391555
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)