Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         33   0.16 
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 

>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 501  KKLWTPTKRPFWRPQLPNGMVASMIGSIVWKNVSNFAE 388
            K L TPT+RP  +P+L  G +    GSI  +N  NF E
Sbjct: 1229 KTLPTPTRRPVCKPKLDLGFLIDGSGSINHRNGRNFVE 1266


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 153  FFLSFEDKNADAILKLSSPLDR-RFYLFIFYYIDGGRTRSPSAVKWLPEPIRGRH*KFRE 329
            F  S+ D+N  ++LK   P D+ R   F+ Y    G   + +  +     +RG   + ++
Sbjct: 1247 FLNSYHDQNRYSVLKKGEPTDKGRRMKFVVYETKDGSNVTTAYNRLKENLVRGASDELKQ 1306

Query: 330  L-TK*HNITI*KCIYCFSK 383
            L  K +NI +    YCF++
Sbjct: 1307 LKLKKNNIGVTSAEYCFAE 1325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,777,490
Number of Sequences: 59808
Number of extensions: 463509
Number of successful extensions: 1220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)