Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    31   0.75 
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    28   5.3  
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    28   5.3  
Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    27   9.2  

>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +3

Query: 117 VYYDDWWLIICCFFLSFEDKNADAILKL------SSPLDRRFYLFIFYYIDGGRTRSP 272
           ++Y  WW ++C  +  F+D   D + K       +   D  + + +F+ +D   T  P
Sbjct: 143 IFYGTWWSVLCYLYFHFDDSTDDYMRKTIFDGYDTKIEDTSYIIVLFHPVDKNGTSHP 200


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 159 KKNSKLSTTNHHNRQCCG-*IDHHHVYVERF 70
           KK+SK    +HH+  CCG   +H H + E F
Sbjct: 314 KKSSKKDHNHHHHHCCCGAQNEHEHTHHEEF 344


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 582 SPDLSPNDFYTFPKIKNKFREQRFSHLKKLWT 487
           SPDL+P D++ F  ++N    Q+F   K + T
Sbjct: 242 SPDLAPTDYHLFRSLQNHLAGQKFHDRKAVET 273


>Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical
           protein C47D12.2 protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 123 YDDWWLIICCFFLSFEDKNADAILKLSSPLD 215
           YD +W  +  F L F+D + D  + L S LD
Sbjct: 29  YDPFWNKLLSFSLKFDDDDEDTRIALESALD 59


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 597 RPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKRPFWRPQLPNGMVASMIGSI 418
           RP TD+ D    D+Y   +I+N + E R + +++    + R     +L N MV   + S+
Sbjct: 542 RPPTDTHDAHGVDYYAPNEIRNAYSESRHASVRQR-PGSGRRISAAELENLMVRQRVPSV 600


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 597 RPSTDSPDLSPNDFYTFPKIKNKFREQRFSHLKKLWTPTKRPFWRPQLPNGMVASMIGSI 418
           RP TD+ D    D+Y   +I+N + E R + +++    + R     +L N MV   + S+
Sbjct: 542 RPPTDTHDAHGVDYYAPNEIRNAYSESRHASVRQR-PGSGRRISAAELENLMVRQRVPSV 600


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 582 SPDLSPNDFYTFPKIKNKFREQRF---SHLK 499
           SPDL+P D++ F  + +  R+++F    HLK
Sbjct: 270 SPDLAPTDYHLFLSLSDYMRDKQFDDEEHLK 300


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 582 SPDLSPNDFYTFPKIKNKFREQRF---SHLK 499
           SPDL+P D++ F  + +  R+++F    HLK
Sbjct: 245 SPDLAPTDYHLFLSLSDYMRDKQFDDEEHLK 275


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 597 RPSTDSPDLSPNDFYTFPKIKNKFREQRFS 508
           R + +  D     F  FP++KNK ++Q FS
Sbjct: 210 RKNCEKFDFRSQKFSRFPRLKNKLKQQHFS 239


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 582 SPDLSPNDFYTFPKIKNKFREQRF---SHLK 499
           SPDL+P D++ F  + +  R+++F    HLK
Sbjct: 270 SPDLAPTDYHLFLSLSDYMRDKQFDDEEHLK 300


>Z82060-3|CAB04883.1|  206|Caenorhabditis elegans Hypothetical
           protein T27F6.4 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 474 PFWRPQLPNGMVASMIGS 421
           P W PQLPN   + M+GS
Sbjct: 183 PIWSPQLPNNNTSLMMGS 200


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 FWRPQLPNGMVASMIGSIVWK 409
           FW+P L N  + ++I  I+WK
Sbjct: 240 FWKPTLLNCNLGALIAGIIWK 260


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 410 FHTMEPIIEATIPFGSWGLQNGRFVGVHSFFR*ENLCSRNLF---FILGKV*KSLGLKSG 580
           +HT +    A +PF  W L  G  VG+ +F     L +       F + ++ + LGL++ 
Sbjct: 20  YHTFDQWTRALLPFAQWNLVPG--VGMDNFIWLTALSTSFTLLGTFFVARMIEVLGLRNS 77

Query: 581 LSVDGLIILCFLALKNLLVC 640
             V   +I+    L  L+VC
Sbjct: 78  AMVSTALII----LYQLVVC 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,472
Number of Sequences: 27780
Number of extensions: 360699
Number of successful extensions: 888
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)