Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0278
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38440.1 68417.m05432 expressed protein                             29   2.8  
At5g32605.1 68418.m03879 hypothetical protein                          28   5.0  
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative...    27   8.7  

>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -3

Query: 462 PQLPNGMVASMIGSIVWKNVS 400
           P+ PN ++AS++GSIV K +S
Sbjct: 10  PEQPNNVLASLVGSIVEKGIS 30


>At5g32605.1 68418.m03879 hypothetical protein
          Length = 365

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 665 PMGVLTPAHRPKDFLEQENIELLDHPRTAP 576
           P+G+LTP   P+D +EQE  E L+    AP
Sbjct: 19  PLGILTPFVSPQDKIEQE--EDLEEEEAAP 46


>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 510

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 340 HFVNSRNFQCRPRM 299
           H VNSRN +CRP M
Sbjct: 192 HMVNSRNLECRPTM 205


>At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative
           similar to telomeric DNA-binding protein 1 [Arabidopsis
           thaliana] gi|13641340|gb|AAK31590
          Length = 619

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 558 FYTFPKIKNKFREQRFSHLKKLWTPTKRPFWRPQLP 451
           FY++ K+ NKF+  R   ++++       +W+ Q+P
Sbjct: 223 FYSYHKLSNKFKSYRSPTIRRIRKSMSSKYWK-QVP 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,011
Number of Sequences: 28952
Number of extensions: 330878
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)