Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   3.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 226  CSISVMVPGGIIYCTFCD 279
            C+ +VM    I+ C FCD
Sbjct: 1043 CNDAVMTSDSIMKCAFCD 1060


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = +2

Query: 299 SVREHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSCSSY 421
           S   +  NH  + S   C+   +    K   +Y C+ C  +
Sbjct: 69  STSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGF 109


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAP 271
           G I  + R S   ++  L W++ ALFT+P
Sbjct: 179 GYICTKTRAS---LICLLAWFIAALFTSP 204


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAP 271
           G I  + R S   ++  L W++ ALFT+P
Sbjct: 179 GYICTKTRAS---LICLLAWFIAALFTSP 204


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 4/11 (36%), Positives = 8/11 (72%)
 Frame = -3

Query: 646 VGTDVLWSLWC 614
           +G + +W +WC
Sbjct: 612 LGAEAMWPVWC 622


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 437 SILHWHVDIRKYVPL 481
           ++LHWH+   +  PL
Sbjct: 247 NVLHWHITDSQSFPL 261


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 428 HLRSILHWHVDIRKYV 475
           HL++ L WH   R +V
Sbjct: 331 HLKAHLRWHTGERPFV 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,947
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)