Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    26   4.2  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   9.7  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   9.7  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 83  INGPMIILQFSGKIKVNIRKSF 148
           INGP I+ + +G+ + N+RK+F
Sbjct: 289 INGPEIMSKMAGESESNLRKAF 310


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 284 LYPLRSVREHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIHLRS 439
           ++P+   R +  NH    +NR  N  S+S     SS+   DS  SY   LRS
Sbjct: 75  IHPIPKARRN--NHVGRWANRHSNVSSSSGSRGRSSVSSRDSSPSYSGALRS 124


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 83  INGPMIILQFSGKIKVNIRKSF 148
           +NGP I+ ++ G+ + N+RK F
Sbjct: 336 VNGPEILNKYVGQSEENVRKLF 357


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 311 HSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIHLR 436
           H T+ +H   N D   +S+SP +    +++    S+  ++ R
Sbjct: 259 HKTSDEHKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRR 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,611
Number of Sequences: 5004
Number of extensions: 54899
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)