Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0648 - 19694538-19696569,19697151-19697998                       30   1.4  
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109...    30   1.9  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    28   7.6  

>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 479 MARIFLYQHANVI*ILGGCGKNYMSHTCTRTKLCLVDYY 363
           + R+ +  HA++     GCG ++  H  T  KL LVD Y
Sbjct: 864 LQRLNIRYHAHITVPERGCGSDFSIHQLTSLKLFLVDIY 902


>12_01_0144 -
           1097579-1097604,1097940-1098127,1098567-1098720,
           1098825-1099092,1099310-1099550,1099669-1099833,
           1099898-1100298
          Length = 480

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 141 LRIFTLILPLNCSIIIGPLMFSLYLYGDIQS 49
           LRIF  ILP  C I++GP +    LY DI S
Sbjct: 260 LRIFAHILPFECYIVLGPRI----LYRDIAS 286


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 329  HNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIHLRSILHWH 454
            H TS+   N+ S SPP     +        YR+ L+ +L  H
Sbjct: 3503 HYTSDEAANSKSKSPPSTLGGMSLNGQTQEYRLLLQKVLKAH 3544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,859
Number of Sequences: 37544
Number of extensions: 304423
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)