Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0277
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24931| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_10807| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5604| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_15884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_24931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 3 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 39
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 18 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 54
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 33 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 69
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 48 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 84
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 63 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 99
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 78 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 114
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 93 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 129
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 108 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 144
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 123 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 159
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 138 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 174
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 153 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 189
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 303 CENILQTTNTTPQTEIATMLVIVHQTKLRPCTSVTHV 413
C L TN T Q + L + + T+ +PC++ HV
Sbjct: 168 CSAYLHVTNLTRQKPCSAYLHVTNLTRQKPCSAYLHV 204
>SB_10807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 269 PFAMFLYPLRSVREHSTNHKHNTSNRDCNNV 361
PFA F +R +REH + + T + NNV
Sbjct: 23 PFAKFANTVREIREHRSRNSRTTFAKFANNV 53
>SB_5604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 257 LFTAPFAMFLYPLRSVREHSTNHKHNTSNRDCNNV 361
LF FA F +R +REH + + T + NNV
Sbjct: 16 LFAKLFAKFANTVREIREHRSRNSRTTFAKFANNV 50
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 284 LYPLRSVREHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDS-CSSYRIHLRSILHWHVD 460
LY S+ + S+ ++ + +SPP K+SSLY+ C S ++ S L+
Sbjct: 625 LYKSSSLYKSSSLYESPPLYKSSPLYKSSPPYKSSSLYRSSPLCKSSSLYKSSPLYKSSS 684
Query: 461 IRKYVPL 481
+ + VPL
Sbjct: 685 LYEIVPL 691
>SB_15884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +2
Query: 326 KHNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIHLRSILHWHVDIRKYVPLTY*VY 496
+ + NRD +N + C++ S R+H ++ +W + K++PL + Y
Sbjct: 7 RKSLGNRDFHNTGKISILRGLISADCEA-SQKRLHHATVFYWRIVTNKFMPLFHDTY 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,757,199
Number of Sequences: 59808
Number of extensions: 382936
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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