Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL109926-1|CAI21748.1|  103|Homo sapiens phosphodiesterase 4B, c...    31   4.8  
U31248-1|AAB04897.1|  407|Homo sapiens zinc finger protein protein.    30   8.4  
DQ139309-1|AAZ73614.1| 1104|Homo sapiens transient receptor pote...    30   8.4  
AY328400-1|AAP92167.1| 1104|Homo sapiens transient receptor pote...    30   8.4  
AY090109-1|AAM10446.1| 1104|Homo sapiens transient receptor pote...    30   8.4  
AB061779-1|BAB86335.1| 1095|Homo sapiens LTRPC6 protein.               30   8.4  

>AL109926-1|CAI21748.1|  103|Homo sapiens phosphodiesterase 4B,
           cAMP-specific (phosphodiesterase E4 dunce homolog,
           Drosop protein.
          Length = 103

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 257 LFTAPFAMFLYPLRSVREHST--NHKHNTSNRDCNNVSNSPPDKASSLYKC 403
           L   PFA  L  LRSVR + T   + H TSN+     S  P  + +   +C
Sbjct: 37  LIVTPFAQVLASLRSVRNNFTILTNLHGTSNKRSPAASQPPVSRVNPQGQC 87


>U31248-1|AAB04897.1|  407|Homo sapiens zinc finger protein protein.
          Length = 407

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 287 YPLRSVREHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSC 412
           +PLR +++ S   K + SNR   ++ + P   A   YKCD C
Sbjct: 292 HPLRELKK-SKGGKRSLSNR-LQHLGHQPTRSAKKPYKCDDC 331


>DQ139309-1|AAZ73614.1| 1104|Homo sapiens transient receptor
           potential subfamily M member 8 protein.
          Length = 1104

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAPFAMF 283
           G +S + +P  K     L WY VA FT+PF +F
Sbjct: 708 GFVSFRKKPVDKHK--KLLWYYVAFFTSPFVVF 738


>AY328400-1|AAP92167.1| 1104|Homo sapiens transient receptor
           potential subfamily M member 8 variant protein.
          Length = 1104

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAPFAMF 283
           G +S + +P  K     L WY VA FT+PF +F
Sbjct: 708 GFVSFRKKPVDKHK--KLLWYYVAFFTSPFVVF 738


>AY090109-1|AAM10446.1| 1104|Homo sapiens transient receptor
           potential cation channel protein protein.
          Length = 1104

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAPFAMF 283
           G +S + +P  K     L WY VA FT+PF +F
Sbjct: 708 GFVSFRKKPVDKHK--KLLWYYVAFFTSPFVVF 738


>AB061779-1|BAB86335.1| 1095|Homo sapiens LTRPC6 protein.
          Length = 1095

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 GLISLQNRPSWKEVVVSL*WYLVALFTAPFAMF 283
           G +S + +P  K     L WY VA FT+PF +F
Sbjct: 699 GFVSFRKKPVDKHK--KLLWYYVAFFTSPFVVF 729


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,206,080
Number of Sequences: 237096
Number of extensions: 1794870
Number of successful extensions: 7519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7519
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)