Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3559|AAF56305.1|  737|Drosophila melanogaster CG13617-P...    29   4.2  
AF004674-1|AAB61467.1|  714|Drosophila melanogaster GPRK2 protein.     28   9.8  
AE014297-4747|AAF57152.1|  714|Drosophila melanogaster CG17998-P...    28   9.8  

>AE014297-3559|AAF56305.1|  737|Drosophila melanogaster CG13617-PA
           protein.
          Length = 737

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 YLLHLLRCFSIHSDRCENILQTTNTTPQTEIATM 359
           Y +  L C   + D C   L+  +TT Q EIAT+
Sbjct: 82  YAIQYLMCCRTYLDECVTDLKEAHTTAQEEIATL 115


>AF004674-1|AAB61467.1|  714|Drosophila melanogaster GPRK2 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 317 TNHKHNTSNRDCNNVSNSPPDKASS 391
           T H +NT+  +CNN++NS   + SS
Sbjct: 151 TEHCNNTTANNCNNINNSNNSQHSS 175


>AE014297-4747|AAF57152.1|  714|Drosophila melanogaster CG17998-PA
           protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 317 TNHKHNTSNRDCNNVSNSPPDKASS 391
           T H +NT+  +CNN++NS   + SS
Sbjct: 151 TEHCNNTTANNCNNINNSNNSQHSS 175


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,119,354
Number of Sequences: 53049
Number of extensions: 548110
Number of successful extensions: 2122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)