Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0277
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC199169-7|ABO33257.1| 127|Caenorhabditis elegans Hypothetical ... 32 0.31
Z92796-6|CAB63232.1| 405|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 28 6.8
U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81593-4|CAB04742.1| 334|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 27 8.9
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 27 8.9
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 27 8.9
>AC199169-7|ABO33257.1| 127|Caenorhabditis elegans Hypothetical
protein F38A1.6 protein.
Length = 127
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 2 LAPKNRDWAPLNYVLSD*MSPYKYNENINGPMIILQFSGKIKVN 133
+ P R W LN V+ D Y Y N N P+ + +SGK V+
Sbjct: 78 IRPLGRGWYNLNPVVYDMKLEYSYANNDNEPLQVRWYSGKAPVD 121
>Z92796-6|CAB63232.1| 405|Caenorhabditis elegans Hypothetical
protein H25K10.7 protein.
Length = 405
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 333 LCLWFVECSRTDRSG*RNIAKGAVNNATRYHHRDTTTSF 217
LC+ V C RT R +N++K + NN + T+F
Sbjct: 281 LCIVLVTCLRTARESRKNLSKSSSNNDRTIYMVTIMTAF 319
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 83 INGPMIILQFSGKIKVNIRKSFFS-EKSQ 166
INGP ++ + SG+ + N+RK+F EK+Q
Sbjct: 275 INGPEVMSKMSGESESNLRKAFEECEKNQ 303
>U97009-3|AAC69031.1| 619|Caenorhabditis elegans Hypothetical
protein T19H12.6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 305 APIGVDRETSQKVQ*IMPPGTITEILQPLSTTGDSEERLVLKEIFSFEIF 156
+P GVD S+ + ++ P EI+ STT S + +L+ + S E+F
Sbjct: 166 SPEGVDFNFSKDLDPVVVPVVPAEIITTTSTT-KSHQSTILESVNSVEVF 214
>Z81593-4|CAB04742.1| 334|Caenorhabditis elegans Hypothetical
protein T20B3.4 protein.
Length = 334
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 578 NVLFI*QNREYVLIASNYTTSNNKTHRYILNRSMARIFLYQHANVI*ILGGCGKNYMSH 402
++ + +NR +VL+ S+ T +T YIL+ + IFL N+ G +N M H
Sbjct: 114 SITIVFENRLFVLVLSDKTLQRFRTPIYILHYILPIIFLPALVNIPDQKAGY-RNLMDH 171
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 583 PITSYLYSRIANTF**HLTTLHQIIKRTAIYSIGQWHVFSYI 458
PIT+Y A + L T + ++K I S +W+VF+YI
Sbjct: 1077 PITTYWLWFFAFIWFLILLTYNLLVKTQRIASWSEWYVFAYI 1118
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 83 INGPMIILQFSGKIKVNIRKSF 148
INGP I+ + SG+ + N+RK+F
Sbjct: 274 INGPEIMSKMSGESESNLRKAF 295
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 83 INGPMIILQFSGKIKVNIRKSF 148
INGP I+ + SG+ + N+RK+F
Sbjct: 274 INGPEIMSKMSGESESNLRKAF 295
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 583 PITSYLYSRIANTF**HLTTLHQIIKRTAIYSIGQWHVFSYI 458
PIT+Y A + L T + ++K I S +W+VF+YI
Sbjct: 1077 PITTYWLWFFAFIWFLILLTYNLLVKTQRIASWSEWYVFAYI 1118
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 583 PITSYLYSRIANTF**HLTTLHQIIKRTAIYSIGQWHVFSYI 458
PIT+Y A + L T + ++K I S +W+VF+YI
Sbjct: 1064 PITTYWLWFFAFIWFLILLTYNLLVKTQRIASWSEWYVFAYI 1105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,928
Number of Sequences: 27780
Number of extensions: 295582
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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