Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0277
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33300.1 68415.m04081 hypothetical protein                          29   2.7  
At2g26530.1 68415.m03183 expressed protein                             29   2.7  
At4g27660.1 68417.m03978 expressed protein  ; expression support...    29   3.6  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    28   6.3  
At1g11060.1 68414.m01267 expressed protein                             27   8.4  

>At2g33300.1 68415.m04081 hypothetical protein
          Length = 265

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 305 REHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIHL 433
           REH ++H H T      +  N  P+K S     D+ + Y++ L
Sbjct: 38  REHQSSHAHETGEVKQIDEQNHVPEKVSMKSVRDNSTCYKVRL 80


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 251 VALFTAPFAMFLYPLRSVREHSTNHKHNTSNRDCNNVSNSPPDKASSLYKCDSCSSYRIH 430
           VA   +PF +  YP     +     + +   +    +S+ P   +S+   C S SS +  
Sbjct: 177 VARSLSPFRVSAYPWEEQEQEQEQEQRDVQEQRKGTLSSIPSTSSSACVSCKSSSSKKWR 236

Query: 431 LRSIL 445
           L+  L
Sbjct: 237 LKDFL 241


>At4g27660.1 68417.m03978 expressed protein  ; expression supported
           by MPSS
          Length = 208

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 172 NISFRTNLSSESPVVERGCSISVMVPGGIIYCTFCDVSLSTPIGARTFYKPQTQHLK 342
           N SF     S+SP  E    ++++   G  YC  CDV         +F  P  + L+
Sbjct: 72  NDSFDARKLSDSPASECDDDVAIVHEKGQCYCYVCDVVAPCAYWTASFATPHCEALE 128


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
          family protein contains leucine rich-repeat domains
          Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
          [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 80 FHCIYMVTFNLIKHS*AAPNLYF 12
          F+CI  + F+ + HS A+P+L+F
Sbjct: 9  FYCIITIYFSFLIHSLASPSLHF 31


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = +2

Query: 284 LYPLRSVREHSTNHKHNT----SNRDCN 355
           LY L S +E S+NH+ N+    SNRDC+
Sbjct: 653 LYQLFSSQEESSNHRLNSQEESSNRDCS 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,906
Number of Sequences: 28952
Number of extensions: 263876
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)