Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0275
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 155 6e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 152 6e-38
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 98 1e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 4e-12
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 29 0.67
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 8.3
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 8.3
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 155 bits (376), Expect = 6e-39
Identities = 65/92 (70%), Positives = 79/92 (85%)
Frame = +2
Query: 233 FQHFLQRAGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 412
F F G GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 413 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 508
T+GKE+VD V D+IR++AD C+GLQGFL+FHS
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHS 140
Score = 88.6 bits (210), Expect = 8e-19
Identities = 38/55 (69%), Positives = 42/55 (76%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSE 254
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSE
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSE 55
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +1
Query: 547 MERLFVDYGKKSKLEFGIYPAPQVSTGVVEPYNFILTTHTTLEHSDWAFMGDNEALYD 720
+ERL ++Y KKSKL+F +YPAPQVST VVEPYN +LTTH TL+ +D FM DNE+ YD
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYD 211
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 152 bits (368), Expect = 6e-38
Identities = 62/92 (67%), Positives = 79/92 (85%)
Frame = +2
Query: 233 FQHFLQRAGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 412
F F G GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 413 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 508
T+GKE++D VL+RIR++AD C+GLQGFL+FHS
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHS 144
Score = 91.9 bits (218), Expect = 8e-20
Identities = 40/58 (68%), Positives = 48/58 (82%)
Frame = +1
Query: 547 MERLFVDYGKKSKLEFGIYPAPQVSTGVVEPYNFILTTHTTLEHSDWAFMGDNEALYD 720
+ERL ++YGKKS L+F +YPAPQVST VVEPYN +LTTH TL++SD FM DNEA YD
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYD 215
Score = 82.6 bits (195), Expect = 5e-17
Identities = 42/60 (70%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 254
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/89 (48%), Positives = 59/89 (66%)
Frame = +2
Query: 242 FLQRAGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIG 421
+ A GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G
Sbjct: 50 YFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEG 109
Query: 422 KEIVDLVLDRIRKLADQCTGLQGFLIFHS 508
E+ D VLD +R+ A+ C LQGF + HS
Sbjct: 110 AELADAVLDVVRREAEACDALQGFQLTHS 138
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 547 MERLFVDYGKKSKLEFGIYPAPQVSTGVVEPYNFILTTHTTLEHSDWAFMGDNEAL 714
+ ++ +Y + F + PAP+ S VVEPYN L+ H +E+SD F DNEAL
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEAL 207
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 191
MRE + + GQ G Q+G A W EHG+ G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG 34
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 66.5 bits (155), Expect = 4e-12
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +2
Query: 242 FLQRAGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 415
F ++ +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 51 FFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 416 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 508
+ I + ++D I + AD L+GF + HS
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHS 140
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +3
Query: 93 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSEPE 260
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF + +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSD 56
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 29.1 bits (62), Expect = 0.67
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 358 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLASSGSLKKVLKESSPPPMVLSVGIW 191
F + + S +++N+ + KID GY + S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 275 VRACQLRLAEESVERIVSTPDG-LVCGHLAIRLDAVL 168
VR C RLA S+ +I+S G CG L + DA+L
Sbjct: 957 VRVCTHRLAYNSLLKIISISQGDTACGDLVV--DAIL 991
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 567 VNEETLHQ*GSEPRAGTSTEEWKIRNPCRPVHWSASLRILSKTKSTIS 424
VNE++ +Q E GTS P+H + SL LSK +IS
Sbjct: 528 VNEDSANQ-KEESALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSIS 574
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 188 WPDAHRQDHRGWRRFFQHFLQR 253
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 577 SSRSQRRDAPSIRK*TQSRYLHRGVEDQESLQTGTLVSELADSVQN 440
SS+ SIR ++SR G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 325 ADLINNSRFKIDEDSTGYVLASSGSLKKVLKESSPPPM 212
AD+IN SR+ ID S +++ L P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 79 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 201
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,056
Number of Sequences: 5004
Number of extensions: 61392
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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