Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0274
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    27   3.4  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   5.9  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 659 LLLST*PSCALAAPEAPGTRKRLAAAAAPRQTILRVPLVRC-RLTKTT 519
           L+LS  P+C +       TR   + +  P QT++    V+C ++T+ T
Sbjct: 466 LILSASPTCTIENIYIENTRLHFSKSQTPEQTVISFIDVQCVKVTEAT 513


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 525 LRQSAADQRNPKNRLSRSCSSCKALS 602
           +RQS AD RN +NR+ R     +A +
Sbjct: 81  IRQSLADYRNLENRMKRDMEQTRAFA 106


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 224 PSAKGSNKSSFTGGRTSCESARLF 153
           P  KG N +SFT  R    + RLF
Sbjct: 238 PREKGDNPASFTSSRNKRSNERLF 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,839
Number of Sequences: 5004
Number of extensions: 47235
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)