Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0274
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883...    30   2.0  
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375...    29   2.6  
03_05_0198 + 21890523-21891002                                         29   2.6  
02_04_0476 + 23248222-23248495,23249558-23249790                       29   4.6  
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230...    28   6.1  
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    28   6.1  

>08_01_0896 +
           8830912-8830984,8831088-8832389,8832502-8832756,
           8832908-8833011
          Length = 577

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 450 DIAGTCSRLCKEAHPMFLDPLRARCLRQSAADQRNPKNRLSRSCSSCKALSCTRGFGGSQ 629
           D +G  S + K + P   DP  + C+ +S       +N L  +C SC    C+    G+Q
Sbjct: 445 DFSGAASIVFKPS-PSICDPNPSWCVAKSEVGDARLQNALDYACGSC--ADCSAIQPGAQ 501

Query: 630 C 632
           C
Sbjct: 502 C 502


>07_01_0504 +
           3756714-3757054,3757205-3757259,3757403-3757477,
           3757638-3757729,3757914-3757995,3758138-3758221,
           3758326-3758445
          Length = 282

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 599 KRLAAAAAPRQ-TILRVPLVRCRLTKTTGSERVEEHWMRFFAQPT 468
           K L    AP++  IL VPL +        S+ + E W+++ A+P+
Sbjct: 237 KLLKVPKAPKEFDILAVPLTKAAFRTLKRSQGLPEEWLQYLARPS 281


>03_05_0198 + 21890523-21891002
          Length = 159

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 318 SPAKARGTAGGADGLQYERSGSAPLSRRTWA 410
           +PA ARG   G DG +   SGSAP+  R W+
Sbjct: 53  APAPARGGRSGGDGGR--GSGSAPVPARQWS 81


>02_04_0476 + 23248222-23248495,23249558-23249790
          Length = 168

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 549 RNPKNRLSRSCSSCKALSCTRGFGG 623
           R  K    RSCSS KA +C  G GG
Sbjct: 5   RYSKRLFKRSCSSSKATACVGGGGG 29


>08_01_0282 +
           2299688-2299859,2300314-2300384,2300780-2300861,
           2300949-2301067,2301338-2301415,2301500-2301619,
           2301729-2301788
          Length = 233

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 297 WGRPVQCSPAKARGTAGGADGLQYERSGSAPLSR 398
           WG     + A A G+A G DG     SG A + R
Sbjct: 4   WGTGSSAASAAAEGSAAGGDGAARSSSGGAAVIR 37


>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 207 TSFCTRFVGKKFI--KVYYVPVYRIAGWPGARWGRPVQ 314
           T F   ++G   I    YY+PVY+  G+ G R   PVQ
Sbjct: 117 TLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHPVQ 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,169
Number of Sequences: 37544
Number of extensions: 367391
Number of successful extensions: 1189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)