Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0274
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)                   34   0.094
SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0)                   29   3.6  
SB_6676| Best HMM Match : UPAR_LY6 (HMM E-Value=0.02)                  29   4.7  
SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_40204| Best HMM Match : KOW (HMM E-Value=0.00011)
          Length = 1198

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 426 HPELTMPMFSEITARFQTARTEVRQXXXXXXXXXLVNIELVD 301
           HPE+T+ MF E+T+RF +A    ++         L NIEL+D
Sbjct: 150 HPEITVHMFQEMTSRFPSATFAGQRCILQYMLPWLANIELMD 191


>SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 587

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 552 NPKNRLSRSCSSCKALSCTRGFGGSQC 632
           +P   +S  C      +CTRGFGG +C
Sbjct: 390 SPVGSVSPDCDVTGHCTCTRGFGGRKC 416


>SB_6676| Best HMM Match : UPAR_LY6 (HMM E-Value=0.02)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 513 RARCLRQSAADQRNPKNRLSRSCSSCKALSCTRGF--GGSQCT 635
           + R  R  +A+Q N + R S  C  C AL C      G +QC+
Sbjct: 10  KKRFTRPLSAEQPNSELRTSNRCLCCSALECPTCMKNGANQCS 52


>SB_5249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 230 NEPSAKGSNKSSFTGGRTSCESARLFLP 147
           NEP +  +N S F G    C++ R +LP
Sbjct: 88  NEPDSYHANDSDFQGNAVLCDTLRQYLP 115


>SB_47477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 181 GPLVSPRAYFCREAVMRFGLKGGAAVVTILRP*NYISRCV 62
           GP+V+P A+  RE  + F  +G  + +   RP  +I  CV
Sbjct: 385 GPMVTPPAFVPRECNVEFSTEGKVSFIARSRP--FIFPCV 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,709
Number of Sequences: 59808
Number of extensions: 400157
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)